Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4884 and GFF4885 are separated by 14 nucleotides GFF4885 and GFF4886 are separated by 92 nucleotides GFF4886 and GFF4887 are separated by 316 nucleotides GFF4887 and GFF4888 are separated by 51 nucleotides GFF4888 and GFF4889 are separated by 154 nucleotides
GFF4884 - hypothetical protein, at 29,569 to 30,003
GFF4884
GFF4885 - hypothetical protein, at 30,018 to 30,257
GFF4885
GFF4886 - hypothetical protein, at 30,350 to 30,595
GFF4886
GFF4887 - hypothetical protein, at 30,912 to 31,397
GFF4887
GFF4888 - hypothetical protein, at 31,449 to 31,784
GFF4888
GFF4889 - hypothetical protein, at 31,939 to 32,703
GFF4889
Position (kb) 30
31
32 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 29.917 kb on + strand, within GFF4884 at 29.917 kb on + strand, within GFF4884 at 29.918 kb on - strand, within GFF4884 at 29.918 kb on - strand, within GFF4884 at 30.020 kb on - strand at 30.442 kb on - strand, within GFF4886 at 30.493 kb on - strand, within GFF4886 at 30.493 kb on - strand, within GFF4886 at 30.493 kb on - strand, within GFF4886 at 30.775 kb on + strand at 30.775 kb on + strand at 30.775 kb on + strand at 30.776 kb on - strand at 30.776 kb on - strand at 30.776 kb on - strand at 30.776 kb on - strand at 30.820 kb on - strand at 30.820 kb on - strand at 30.820 kb on - strand at 30.820 kb on - strand at 30.820 kb on - strand at 30.839 kb on + strand at 30.905 kb on - strand at 30.905 kb on - strand at 30.932 kb on + strand at 31.176 kb on + strand, within GFF4887 at 31.176 kb on + strand, within GFF4887 at 31.176 kb on + strand, within GFF4887 at 31.176 kb on + strand, within GFF4887 at 31.176 kb on + strand, within GFF4887 at 31.176 kb on + strand, within GFF4887 at 31.363 kb on - strand at 31.363 kb on - strand at 31.363 kb on - strand at 31.363 kb on - strand at 31.363 kb on - strand at 31.534 kb on + strand, within GFF4888 at 31.534 kb on + strand, within GFF4888 at 31.534 kb on + strand, within GFF4888 at 31.639 kb on + strand, within GFF4888 at 31.639 kb on + strand, within GFF4888 at 31.639 kb on + strand, within GFF4888 at 31.639 kb on + strand, within GFF4888 at 31.639 kb on + strand, within GFF4888 at 31.640 kb on - strand, within GFF4888 at 31.640 kb on - strand, within GFF4888 at 31.640 kb on - strand, within GFF4888 at 31.640 kb on - strand, within GFF4888 at 32.012 kb on + strand at 32.012 kb on + strand at 32.012 kb on + strand at 32.013 kb on - strand at 32.114 kb on + strand, within GFF4889 at 32.115 kb on - strand, within GFF4889 at 32.132 kb on + strand, within GFF4889 at 32.133 kb on - strand, within GFF4889 at 32.160 kb on - strand, within GFF4889 at 32.306 kb on + strand, within GFF4889 at 32.351 kb on + strand, within GFF4889 at 32.352 kb on - strand, within GFF4889 at 32.376 kb on - strand, within GFF4889
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 29,917 + GFF4884 0.80 -2.8 29,917 + GFF4884 0.80 +0.1 29,918 - GFF4884 0.80 +0.1 29,918 - GFF4884 0.80 +0.8 30,020 - -0.2 30,442 - GFF4886 0.37 -0.2 30,493 - GFF4886 0.58 -0.9 30,493 - GFF4886 0.58 +0.1 30,493 - GFF4886 0.58 -0.3 30,775 + -0.5 30,775 + -1.1 30,775 + -0.8 30,776 - -0.4 30,776 - -1.7 30,776 - -0.5 30,776 - -0.3 30,820 - +0.5 30,820 - -0.8 30,820 - -0.9 30,820 - -1.6 30,820 - -0.5 30,839 + +0.4 30,905 - -0.7 30,905 - -0.3 30,932 + -1.3 31,176 + GFF4887 0.54 -1.2 31,176 + GFF4887 0.54 -0.8 31,176 + GFF4887 0.54 -0.2 31,176 + GFF4887 0.54 -0.1 31,176 + GFF4887 0.54 -1.0 31,176 + GFF4887 0.54 -0.6 31,363 - -0.0 31,363 - -0.1 31,363 - -0.4 31,363 - +0.1 31,363 - +0.2 31,534 + GFF4888 0.25 -0.8 31,534 + GFF4888 0.25 -0.6 31,534 + GFF4888 0.25 -0.2 31,639 + GFF4888 0.57 -0.9 31,639 + GFF4888 0.57 +0.8 31,639 + GFF4888 0.57 +0.6 31,639 + GFF4888 0.57 +0.4 31,639 + GFF4888 0.57 -0.0 31,640 - GFF4888 0.57 -1.3 31,640 - GFF4888 0.57 +1.2 31,640 - GFF4888 0.57 -0.1 31,640 - GFF4888 0.57 +0.9 32,012 + +0.0 32,012 + +0.6 32,012 + -0.4 32,013 - +0.8 32,114 + GFF4889 0.23 +0.4 32,115 - GFF4889 0.23 -0.2 32,132 + GFF4889 0.25 +0.8 32,133 - GFF4889 0.25 +1.0 32,160 - GFF4889 0.29 +0.3 32,306 + GFF4889 0.48 -0.4 32,351 + GFF4889 0.54 +0.6 32,352 - GFF4889 0.54 -0.6 32,376 - GFF4889 0.57 +0.4
Or see this region's nucleotide sequence