Strain Fitness in Xanthobacter sp. DMC5 around GFF4882

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4880 and GFF4881 are separated by 187 nucleotidesGFF4881 and GFF4882 are separated by 45 nucleotidesGFF4882 and GFF4883 are separated by 27 nucleotidesGFF4883 and GFF4884 are separated by 24 nucleotidesGFF4884 and GFF4885 are separated by 14 nucleotides GFF4880 - hypothetical protein, at 27,909 to 28,304 GFF4880 GFF4881 - hypothetical protein, at 28,492 to 28,971 GFF4881 GFF4882 - hypothetical protein, at 29,017 to 29,349 GFF4882 GFF4883 - hypothetical protein, at 29,377 to 29,544 GFF4883 GFF4884 - hypothetical protein, at 29,569 to 30,003 GFF4884 GFF4885 - hypothetical protein, at 30,018 to 30,257 GFF4885 Position (kb) 29 30Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 28.071 kb on + strand, within GFF4880at 28.071 kb on + strand, within GFF4880at 28.071 kb on + strand, within GFF4880at 28.072 kb on - strand, within GFF4880at 28.072 kb on - strand, within GFF4880at 28.383 kb on + strandat 28.384 kb on - strandat 28.681 kb on + strand, within GFF4881at 28.682 kb on - strand, within GFF4881at 28.682 kb on - strand, within GFF4881at 28.682 kb on - strand, within GFF4881at 29.012 kb on + strandat 29.012 kb on + strandat 29.012 kb on + strandat 29.012 kb on + strandat 29.013 kb on - strandat 29.013 kb on - strandat 29.013 kb on - strandat 29.076 kb on + strand, within GFF4882at 29.076 kb on + strand, within GFF4882at 29.077 kb on - strand, within GFF4882at 29.077 kb on - strand, within GFF4882at 29.077 kb on - strand, within GFF4882at 29.078 kb on + strand, within GFF4882at 29.078 kb on + strand, within GFF4882at 29.079 kb on - strand, within GFF4882at 29.079 kb on - strand, within GFF4882at 29.083 kb on + strand, within GFF4882at 29.083 kb on + strand, within GFF4882at 29.083 kb on + strand, within GFF4882at 29.083 kb on + strand, within GFF4882at 29.083 kb on + strand, within GFF4882at 29.083 kb on + strand, within GFF4882at 29.084 kb on - strand, within GFF4882at 29.084 kb on - strand, within GFF4882at 29.084 kb on - strand, within GFF4882at 29.084 kb on - strand, within GFF4882at 29.084 kb on - strand, within GFF4882at 29.212 kb on + strand, within GFF4882at 29.213 kb on - strand, within GFF4882at 29.239 kb on + strand, within GFF4882at 29.245 kb on + strand, within GFF4882at 29.245 kb on + strand, within GFF4882at 29.337 kb on - strandat 29.542 kb on + strandat 29.542 kb on + strandat 29.543 kb on - strandat 29.543 kb on - strandat 29.599 kb on + strandat 29.599 kb on + strandat 29.599 kb on + strandat 29.599 kb on + strandat 29.599 kb on + strandat 29.599 kb on + strandat 29.600 kb on - strandat 29.600 kb on - strandat 29.600 kb on - strandat 29.600 kb on - strandat 29.600 kb on - strandat 29.639 kb on + strand, within GFF4884at 29.640 kb on - strand, within GFF4884at 29.650 kb on + strand, within GFF4884at 29.650 kb on + strand, within GFF4884at 29.650 kb on + strand, within GFF4884at 29.740 kb on + strand, within GFF4884at 29.773 kb on + strand, within GFF4884at 29.774 kb on - strand, within GFF4884at 29.917 kb on + strand, within GFF4884at 29.917 kb on + strand, within GFF4884at 29.918 kb on - strand, within GFF4884at 29.918 kb on - strand, within GFF4884at 30.020 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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28,071 + GFF4880 0.41 +1.9
28,071 + GFF4880 0.41 +0.7
28,071 + GFF4880 0.41 +0.3
28,072 - GFF4880 0.41 +0.2
28,072 - GFF4880 0.41 +0.0
28,383 + -0.6
28,384 - +0.2
28,681 + GFF4881 0.39 +1.2
28,682 - GFF4881 0.40 +0.6
28,682 - GFF4881 0.40 +0.2
28,682 - GFF4881 0.40 -0.7
29,012 + +1.0
29,012 + +0.2
29,012 + +0.1
29,012 + +0.5
29,013 - +0.1
29,013 - +1.4
29,013 - -0.6
29,076 + GFF4882 0.18 +1.9
29,076 + GFF4882 0.18 +1.6
29,077 - GFF4882 0.18 +1.2
29,077 - GFF4882 0.18 -1.7
29,077 - GFF4882 0.18 +0.8
29,078 + GFF4882 0.18 +0.3
29,078 + GFF4882 0.18 +0.3
29,079 - GFF4882 0.19 -1.3
29,079 - GFF4882 0.19 -0.7
29,083 + GFF4882 0.20 -1.1
29,083 + GFF4882 0.20 +1.1
29,083 + GFF4882 0.20 -1.4
29,083 + GFF4882 0.20 -1.1
29,083 + GFF4882 0.20 +1.3
29,083 + GFF4882 0.20 +0.7
29,084 - GFF4882 0.20 +0.6
29,084 - GFF4882 0.20 -0.0
29,084 - GFF4882 0.20 -0.8
29,084 - GFF4882 0.20 +0.1
29,084 - GFF4882 0.20 -1.0
29,212 + GFF4882 0.59 +0.5
29,213 - GFF4882 0.59 -0.4
29,239 + GFF4882 0.67 -0.0
29,245 + GFF4882 0.68 +0.4
29,245 + GFF4882 0.68 -0.5
29,337 - +0.8
29,542 + +0.8
29,542 + -1.0
29,543 - -0.1
29,543 - -0.9
29,599 + -0.3
29,599 + +0.8
29,599 + -0.4
29,599 + +0.3
29,599 + -0.1
29,599 + -0.1
29,600 - +0.7
29,600 - +0.8
29,600 - -0.7
29,600 - +1.9
29,600 - +0.7
29,639 + GFF4884 0.16 +0.6
29,640 - GFF4884 0.16 +0.2
29,650 + GFF4884 0.19 +1.2
29,650 + GFF4884 0.19 +0.1
29,650 + GFF4884 0.19 +0.6
29,740 + GFF4884 0.39 +0.1
29,773 + GFF4884 0.47 -1.5
29,774 - GFF4884 0.47 -0.6
29,917 + GFF4884 0.80 -2.8
29,917 + GFF4884 0.80 +0.1
29,918 - GFF4884 0.80 +0.1
29,918 - GFF4884 0.80 +0.8
30,020 - -0.2

Or see this region's nucleotide sequence