Strain Fitness in Xanthobacter sp. DMC5 around GFF4845

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4844 and GFF4845 are separated by 132 nucleotidesGFF4845 and GFF4846 are separated by 9 nucleotides GFF4844 - Nitrogenase molybdenum-iron protein beta chain, at 1,689 to 3,248 GFF4844 GFF4845 - Light-independent protochlorophyllide reductase subunit B, at 3,381 to 5,276 GFF4845 GFF4846 - Nitrogenase molybdenum-iron protein beta chain, at 5,286 to 6,725 GFF4846 Position (kb) 3 4 5 6Strain fitness (log2 ratio) -2 -1 0 1 2at 2.394 kb on + strand, within GFF4844at 2.394 kb on + strand, within GFF4844at 2.394 kb on + strand, within GFF4844at 2.394 kb on + strand, within GFF4844at 2.394 kb on + strand, within GFF4844at 2.394 kb on + strand, within GFF4844at 2.395 kb on - strand, within GFF4844at 2.395 kb on - strand, within GFF4844at 2.395 kb on - strand, within GFF4844at 2.451 kb on + strand, within GFF4844at 2.452 kb on - strand, within GFF4844at 2.452 kb on - strand, within GFF4844at 2.452 kb on - strand, within GFF4844at 2.514 kb on + strand, within GFF4844at 2.514 kb on + strand, within GFF4844at 2.515 kb on - strand, within GFF4844at 2.515 kb on - strand, within GFF4844at 2.515 kb on - strand, within GFF4844at 2.515 kb on - strand, within GFF4844at 2.515 kb on - strand, within GFF4844at 2.515 kb on - strand, within GFF4844at 2.515 kb on - strand, within GFF4844at 2.586 kb on + strand, within GFF4844at 2.587 kb on - strand, within GFF4844at 2.587 kb on - strand, within GFF4844at 2.587 kb on - strand, within GFF4844at 2.587 kb on - strand, within GFF4844at 2.805 kb on + strand, within GFF4844at 2.805 kb on + strand, within GFF4844at 2.806 kb on - strand, within GFF4844at 2.930 kb on + strand, within GFF4844at 2.931 kb on - strand, within GFF4844at 2.931 kb on - strand, within GFF4844at 2.931 kb on - strand, within GFF4844at 2.962 kb on - strand, within GFF4844at 2.962 kb on - strand, within GFF4844at 3.036 kb on + strand, within GFF4844at 3.036 kb on + strand, within GFF4844at 3.036 kb on + strand, within GFF4844at 3.037 kb on - strand, within GFF4844at 3.045 kb on + strand, within GFF4844at 3.045 kb on + strand, within GFF4844at 3.135 kb on + strandat 3.136 kb on - strandat 3.226 kb on - strandat 3.226 kb on - strandat 3.254 kb on + strandat 3.254 kb on + strandat 3.596 kb on + strand, within GFF4845at 3.596 kb on + strand, within GFF4845at 3.596 kb on + strand, within GFF4845at 3.596 kb on + strand, within GFF4845at 3.596 kb on + strand, within GFF4845at 3.597 kb on - strand, within GFF4845at 3.597 kb on - strand, within GFF4845at 3.739 kb on - strand, within GFF4845at 3.762 kb on + strand, within GFF4845at 3.762 kb on + strand, within GFF4845at 3.762 kb on + strand, within GFF4845at 3.871 kb on + strand, within GFF4845at 3.871 kb on + strand, within GFF4845at 3.871 kb on + strand, within GFF4845at 3.872 kb on - strand, within GFF4845at 3.872 kb on - strand, within GFF4845at 3.948 kb on + strand, within GFF4845at 3.949 kb on - strand, within GFF4845at 3.949 kb on - strand, within GFF4845at 3.961 kb on - strand, within GFF4845at 3.961 kb on - strand, within GFF4845at 3.961 kb on - strand, within GFF4845at 3.961 kb on - strand, within GFF4845at 3.985 kb on - strand, within GFF4845at 3.985 kb on - strand, within GFF4845at 4.074 kb on + strand, within GFF4845at 4.075 kb on - strand, within GFF4845at 4.075 kb on - strand, within GFF4845at 4.075 kb on - strand, within GFF4845at 4.080 kb on + strand, within GFF4845at 4.168 kb on - strand, within GFF4845at 4.198 kb on - strand, within GFF4845at 4.198 kb on - strand, within GFF4845at 4.198 kb on - strand, within GFF4845at 4.542 kb on + strand, within GFF4845at 4.659 kb on + strand, within GFF4845at 4.659 kb on + strand, within GFF4845at 4.659 kb on + strand, within GFF4845at 4.659 kb on + strand, within GFF4845at 4.659 kb on + strand, within GFF4845at 4.660 kb on - strand, within GFF4845at 4.660 kb on - strand, within GFF4845at 4.660 kb on - strand, within GFF4845at 4.660 kb on - strand, within GFF4845at 4.661 kb on + strand, within GFF4845at 4.661 kb on + strand, within GFF4845at 4.662 kb on - strand, within GFF4845at 4.668 kb on + strand, within GFF4845at 4.668 kb on + strand, within GFF4845at 4.669 kb on - strand, within GFF4845at 4.713 kb on + strand, within GFF4845at 4.713 kb on + strand, within GFF4845at 4.713 kb on + strand, within GFF4845at 4.713 kb on + strand, within GFF4845at 4.713 kb on + strand, within GFF4845at 4.714 kb on - strand, within GFF4845at 4.714 kb on - strand, within GFF4845at 4.859 kb on + strand, within GFF4845at 4.860 kb on - strand, within GFF4845at 4.915 kb on - strand, within GFF4845at 5.274 kb on + strandat 5.274 kb on + strandat 5.274 kb on + strandat 5.275 kb on - strandat 5.275 kb on - strandat 5.312 kb on - strandat 5.348 kb on + strandat 5.349 kb on - strandat 5.349 kb on - strandat 5.434 kb on + strand, within GFF4846at 5.435 kb on - strand, within GFF4846at 5.435 kb on - strand, within GFF4846at 5.435 kb on - strand, within GFF4846at 5.547 kb on + strand, within GFF4846at 5.547 kb on + strand, within GFF4846at 5.548 kb on - strand, within GFF4846at 5.548 kb on - strand, within GFF4846at 5.625 kb on + strand, within GFF4846at 5.625 kb on + strand, within GFF4846at 5.625 kb on + strand, within GFF4846at 5.626 kb on - strand, within GFF4846at 5.626 kb on - strand, within GFF4846at 5.626 kb on - strand, within GFF4846at 5.649 kb on + strand, within GFF4846at 5.650 kb on - strand, within GFF4846at 5.679 kb on + strand, within GFF4846at 5.679 kb on + strand, within GFF4846at 5.679 kb on + strand, within GFF4846at 5.679 kb on + strand, within GFF4846at 5.679 kb on + strand, within GFF4846at 5.679 kb on + strand, within GFF4846at 5.680 kb on - strand, within GFF4846at 5.680 kb on - strand, within GFF4846at 5.680 kb on - strand, within GFF4846at 5.680 kb on - strand, within GFF4846at 6.067 kb on - strand, within GFF4846

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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2,394 + GFF4844 0.45 -0.5
2,394 + GFF4844 0.45 -0.4
2,394 + GFF4844 0.45 +0.3
2,394 + GFF4844 0.45 +0.1
2,394 + GFF4844 0.45 +0.5
2,394 + GFF4844 0.45 -0.5
2,395 - GFF4844 0.45 -0.6
2,395 - GFF4844 0.45 +2.4
2,395 - GFF4844 0.45 -1.4
2,451 + GFF4844 0.49 -0.1
2,452 - GFF4844 0.49 -0.1
2,452 - GFF4844 0.49 +1.1
2,452 - GFF4844 0.49 -0.1
2,514 + GFF4844 0.53 -1.6
2,514 + GFF4844 0.53 -0.2
2,515 - GFF4844 0.53 -1.0
2,515 - GFF4844 0.53 -0.4
2,515 - GFF4844 0.53 -0.1
2,515 - GFF4844 0.53 -0.6
2,515 - GFF4844 0.53 +0.5
2,515 - GFF4844 0.53 -0.1
2,515 - GFF4844 0.53 +0.3
2,586 + GFF4844 0.57 +0.4
2,587 - GFF4844 0.58 +0.0
2,587 - GFF4844 0.58 -0.6
2,587 - GFF4844 0.58 -1.4
2,587 - GFF4844 0.58 +0.6
2,805 + GFF4844 0.72 +1.4
2,805 + GFF4844 0.72 +0.4
2,806 - GFF4844 0.72 +0.8
2,930 + GFF4844 0.80 +0.4
2,931 - GFF4844 0.80 -0.8
2,931 - GFF4844 0.80 -0.6
2,931 - GFF4844 0.80 +1.0
2,962 - GFF4844 0.82 -0.4
2,962 - GFF4844 0.82 -0.8
3,036 + GFF4844 0.86 +0.8
3,036 + GFF4844 0.86 +0.5
3,036 + GFF4844 0.86 +0.3
3,037 - GFF4844 0.86 -0.3
3,045 + GFF4844 0.87 +0.6
3,045 + GFF4844 0.87 +0.8
3,135 + -0.2
3,136 - -2.2
3,226 - -0.7
3,226 - -1.8
3,254 + +0.0
3,254 + +0.5
3,596 + GFF4845 0.11 +0.4
3,596 + GFF4845 0.11 +0.7
3,596 + GFF4845 0.11 +0.2
3,596 + GFF4845 0.11 +0.1
3,596 + GFF4845 0.11 +0.0
3,597 - GFF4845 0.11 -0.3
3,597 - GFF4845 0.11 +2.1
3,739 - GFF4845 0.19 +0.9
3,762 + GFF4845 0.20 -0.1
3,762 + GFF4845 0.20 +0.5
3,762 + GFF4845 0.20 +0.1
3,871 + GFF4845 0.26 +0.0
3,871 + GFF4845 0.26 +0.7
3,871 + GFF4845 0.26 -0.5
3,872 - GFF4845 0.26 -1.3
3,872 - GFF4845 0.26 +0.7
3,948 + GFF4845 0.30 +0.1
3,949 - GFF4845 0.30 +1.1
3,949 - GFF4845 0.30 +0.1
3,961 - GFF4845 0.31 +0.6
3,961 - GFF4845 0.31 +0.2
3,961 - GFF4845 0.31 +1.4
3,961 - GFF4845 0.31 -1.3
3,985 - GFF4845 0.32 -0.1
3,985 - GFF4845 0.32 +0.4
4,074 + GFF4845 0.37 -0.7
4,075 - GFF4845 0.37 +0.5
4,075 - GFF4845 0.37 -0.1
4,075 - GFF4845 0.37 -0.8
4,080 + GFF4845 0.37 -0.4
4,168 - GFF4845 0.42 -0.6
4,198 - GFF4845 0.43 -1.3
4,198 - GFF4845 0.43 +0.2
4,198 - GFF4845 0.43 +0.7
4,542 + GFF4845 0.61 +1.2
4,659 + GFF4845 0.67 +1.1
4,659 + GFF4845 0.67 +0.1
4,659 + GFF4845 0.67 -0.9
4,659 + GFF4845 0.67 -0.2
4,659 + GFF4845 0.67 +0.8
4,660 - GFF4845 0.67 -0.9
4,660 - GFF4845 0.67 -0.5
4,660 - GFF4845 0.67 -0.3
4,660 - GFF4845 0.67 -0.4
4,661 + GFF4845 0.68 +0.2
4,661 + GFF4845 0.68 -1.1
4,662 - GFF4845 0.68 -1.3
4,668 + GFF4845 0.68 +0.8
4,668 + GFF4845 0.68 +0.0
4,669 - GFF4845 0.68 +0.2
4,713 + GFF4845 0.70 -0.8
4,713 + GFF4845 0.70 +0.3
4,713 + GFF4845 0.70 +0.0
4,713 + GFF4845 0.70 +0.8
4,713 + GFF4845 0.70 +0.1
4,714 - GFF4845 0.70 +0.5
4,714 - GFF4845 0.70 +0.1
4,859 + GFF4845 0.78 +0.8
4,860 - GFF4845 0.78 +1.3
4,915 - GFF4845 0.81 +0.1
5,274 + -0.3
5,274 + -0.5
5,274 + +1.3
5,275 - -0.4
5,275 - -0.1
5,312 - -1.3
5,348 + -0.2
5,349 - -0.9
5,349 - -0.7
5,434 + GFF4846 0.10 +1.4
5,435 - GFF4846 0.10 -0.2
5,435 - GFF4846 0.10 -0.7
5,435 - GFF4846 0.10 -0.3
5,547 + GFF4846 0.18 +0.8
5,547 + GFF4846 0.18 -0.9
5,548 - GFF4846 0.18 +0.0
5,548 - GFF4846 0.18 -0.3
5,625 + GFF4846 0.24 -0.1
5,625 + GFF4846 0.24 -0.2
5,625 + GFF4846 0.24 +0.2
5,626 - GFF4846 0.24 -1.9
5,626 - GFF4846 0.24 -0.3
5,626 - GFF4846 0.24 -0.0
5,649 + GFF4846 0.25 +1.2
5,650 - GFF4846 0.25 -0.4
5,679 + GFF4846 0.27 -0.4
5,679 + GFF4846 0.27 +1.0
5,679 + GFF4846 0.27 -0.0
5,679 + GFF4846 0.27 -0.6
5,679 + GFF4846 0.27 -0.8
5,679 + GFF4846 0.27 -0.3
5,680 - GFF4846 0.27 -0.6
5,680 - GFF4846 0.27 -0.7
5,680 - GFF4846 0.27 +0.7
5,680 - GFF4846 0.27 +0.6
6,067 - GFF4846 0.54 -2.3

Or see this region's nucleotide sequence