Strain Fitness in Xanthobacter sp. DMC5 around GFF4837

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4836 and GFF4837 are separated by 152 nucleotidesGFF4837 and GFF4838 are separated by 31 nucleotidesGFF4838 and GFF4839 are separated by 185 nucleotides GFF4836 - Divalent metal cation transporter MntH, at 76,220 to 77,530 GFF4836 GFF4837 - hypothetical protein, at 77,683 to 78,315 GFF4837 GFF4838 - hypothetical protein, at 78,347 to 78,967 GFF4838 GFF4839 - Carnitine monooxygenase oxygenase subunit, at 79,153 to 80,328 GFF4839 Position (kb) 77 78 79Strain fitness (log2 ratio) -2 -1 0 1 2at 76.875 kb on + strand, within GFF4836at 76.875 kb on + strand, within GFF4836at 76.876 kb on - strand, within GFF4836at 77.058 kb on + strand, within GFF4836at 77.058 kb on + strand, within GFF4836at 77.059 kb on - strand, within GFF4836at 77.059 kb on - strand, within GFF4836at 77.059 kb on - strand, within GFF4836at 77.109 kb on + strand, within GFF4836at 77.109 kb on + strand, within GFF4836at 77.109 kb on + strand, within GFF4836at 77.109 kb on + strand, within GFF4836at 77.109 kb on + strand, within GFF4836at 77.109 kb on + strand, within GFF4836at 77.109 kb on + strand, within GFF4836at 77.110 kb on - strand, within GFF4836at 77.110 kb on - strand, within GFF4836at 77.110 kb on - strand, within GFF4836at 77.110 kb on - strand, within GFF4836at 77.110 kb on - strand, within GFF4836at 77.110 kb on - strand, within GFF4836at 77.223 kb on - strand, within GFF4836at 77.223 kb on - strand, within GFF4836at 77.235 kb on + strand, within GFF4836at 77.236 kb on - strand, within GFF4836at 77.236 kb on - strand, within GFF4836at 77.240 kb on + strand, within GFF4836at 77.240 kb on + strand, within GFF4836at 77.241 kb on - strand, within GFF4836at 77.241 kb on - strand, within GFF4836at 77.335 kb on + strand, within GFF4836at 77.335 kb on + strand, within GFF4836at 77.335 kb on + strand, within GFF4836at 77.335 kb on + strand, within GFF4836at 77.335 kb on + strand, within GFF4836at 77.335 kb on + strand, within GFF4836at 77.336 kb on - strand, within GFF4836at 77.336 kb on - strand, within GFF4836at 77.353 kb on - strand, within GFF4836at 77.353 kb on - strand, within GFF4836at 77.379 kb on + strand, within GFF4836at 77.379 kb on + strand, within GFF4836at 77.380 kb on - strand, within GFF4836at 77.535 kb on + strandat 77.535 kb on + strandat 77.536 kb on - strandat 77.671 kb on + strandat 77.671 kb on + strandat 77.672 kb on - strandat 77.673 kb on + strandat 77.673 kb on + strandat 77.673 kb on + strandat 77.673 kb on + strandat 77.673 kb on + strandat 77.673 kb on + strandat 77.673 kb on + strandat 77.674 kb on - strandat 77.674 kb on - strandat 77.674 kb on - strandat 77.674 kb on - strandat 77.674 kb on - strandat 77.680 kb on - strandat 77.680 kb on - strandat 77.923 kb on + strand, within GFF4837at 77.968 kb on + strand, within GFF4837at 77.968 kb on + strand, within GFF4837at 77.969 kb on - strand, within GFF4837at 77.969 kb on - strand, within GFF4837at 78.043 kb on + strand, within GFF4837at 78.179 kb on + strand, within GFF4837at 78.180 kb on - strand, within GFF4837at 78.180 kb on - strand, within GFF4837at 78.252 kb on + strandat 78.316 kb on + strandat 78.316 kb on + strandat 78.397 kb on + strandat 78.397 kb on + strandat 78.397 kb on + strandat 78.398 kb on - strandat 78.398 kb on - strandat 78.398 kb on - strandat 78.497 kb on + strand, within GFF4838at 78.526 kb on + strand, within GFF4838at 78.527 kb on - strand, within GFF4838at 78.596 kb on - strand, within GFF4838at 78.660 kb on + strand, within GFF4838at 78.660 kb on + strand, within GFF4838at 78.660 kb on + strand, within GFF4838at 78.660 kb on + strand, within GFF4838at 78.660 kb on + strand, within GFF4838at 78.660 kb on + strand, within GFF4838at 78.661 kb on - strand, within GFF4838at 78.661 kb on - strand, within GFF4838at 78.661 kb on - strand, within GFF4838at 78.662 kb on + strand, within GFF4838at 78.663 kb on - strand, within GFF4838at 78.663 kb on - strand, within GFF4838at 78.665 kb on - strand, within GFF4838at 78.757 kb on + strand, within GFF4838at 78.757 kb on + strand, within GFF4838at 78.757 kb on + strand, within GFF4838at 78.757 kb on + strand, within GFF4838at 78.758 kb on - strand, within GFF4838at 78.758 kb on - strand, within GFF4838at 79.109 kb on + strandat 79.109 kb on + strandat 79.110 kb on - strandat 79.110 kb on - strandat 79.152 kb on + strandat 79.152 kb on + strandat 79.153 kb on - strandat 79.153 kb on - strandat 79.153 kb on - strandat 79.153 kb on - strandat 79.153 kb on - strandat 79.276 kb on + strand, within GFF4839at 79.277 kb on - strand, within GFF4839at 79.294 kb on + strand, within GFF4839at 79.294 kb on + strand, within GFF4839at 79.294 kb on + strand, within GFF4839at 79.295 kb on - strand, within GFF4839at 79.295 kb on - strand, within GFF4839

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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76,875 + GFF4836 0.50 +0.5
76,875 + GFF4836 0.50 -1.1
76,876 - GFF4836 0.50 +1.7
77,058 + GFF4836 0.64 -0.1
77,058 + GFF4836 0.64 +0.6
77,059 - GFF4836 0.64 -1.5
77,059 - GFF4836 0.64 +0.1
77,059 - GFF4836 0.64 +2.3
77,109 + GFF4836 0.68 +0.6
77,109 + GFF4836 0.68 +0.1
77,109 + GFF4836 0.68 +0.1
77,109 + GFF4836 0.68 +0.1
77,109 + GFF4836 0.68 -1.8
77,109 + GFF4836 0.68 -0.3
77,109 + GFF4836 0.68 -1.0
77,110 - GFF4836 0.68 -0.5
77,110 - GFF4836 0.68 -0.4
77,110 - GFF4836 0.68 -0.3
77,110 - GFF4836 0.68 +0.1
77,110 - GFF4836 0.68 -1.0
77,110 - GFF4836 0.68 -0.1
77,223 - GFF4836 0.77 +0.6
77,223 - GFF4836 0.77 +1.9
77,235 + GFF4836 0.77 -1.0
77,236 - GFF4836 0.77 +0.3
77,236 - GFF4836 0.77 +0.2
77,240 + GFF4836 0.78 +0.1
77,240 + GFF4836 0.78 -0.7
77,241 - GFF4836 0.78 +1.2
77,241 - GFF4836 0.78 +0.3
77,335 + GFF4836 0.85 +0.1
77,335 + GFF4836 0.85 +0.6
77,335 + GFF4836 0.85 -0.8
77,335 + GFF4836 0.85 +1.3
77,335 + GFF4836 0.85 +0.4
77,335 + GFF4836 0.85 +0.3
77,336 - GFF4836 0.85 -0.2
77,336 - GFF4836 0.85 -1.0
77,353 - GFF4836 0.86 -1.1
77,353 - GFF4836 0.86 +0.7
77,379 + GFF4836 0.88 -0.4
77,379 + GFF4836 0.88 -0.1
77,380 - GFF4836 0.88 -0.7
77,535 + +0.5
77,535 + -0.7
77,536 - +0.4
77,671 + +1.4
77,671 + +1.1
77,672 - -1.2
77,673 + -0.3
77,673 + -0.8
77,673 + +0.0
77,673 + +0.2
77,673 + +1.0
77,673 + -0.1
77,673 + -0.1
77,674 - +0.0
77,674 - -1.5
77,674 - +0.3
77,674 - +0.4
77,674 - -0.6
77,680 - +1.7
77,680 - +0.7
77,923 + GFF4837 0.38 +0.9
77,968 + GFF4837 0.45 -0.2
77,968 + GFF4837 0.45 +0.6
77,969 - GFF4837 0.45 +0.0
77,969 - GFF4837 0.45 -0.2
78,043 + GFF4837 0.57 -0.8
78,179 + GFF4837 0.78 -0.6
78,180 - GFF4837 0.79 +0.6
78,180 - GFF4837 0.79 -1.0
78,252 + -1.5
78,316 + +1.4
78,316 + -0.1
78,397 + -1.4
78,397 + +0.8
78,397 + +1.0
78,398 - +0.9
78,398 - -0.0
78,398 - +0.1
78,497 + GFF4838 0.24 +0.9
78,526 + GFF4838 0.29 -0.7
78,527 - GFF4838 0.29 +0.4
78,596 - GFF4838 0.40 -0.6
78,660 + GFF4838 0.50 +1.4
78,660 + GFF4838 0.50 +1.1
78,660 + GFF4838 0.50 +0.1
78,660 + GFF4838 0.50 +0.9
78,660 + GFF4838 0.50 +1.5
78,660 + GFF4838 0.50 +0.2
78,661 - GFF4838 0.51 +0.1
78,661 - GFF4838 0.51 +1.9
78,661 - GFF4838 0.51 -0.6
78,662 + GFF4838 0.51 -0.6
78,663 - GFF4838 0.51 +1.1
78,663 - GFF4838 0.51 +1.0
78,665 - GFF4838 0.51 -1.8
78,757 + GFF4838 0.66 +1.2
78,757 + GFF4838 0.66 +0.4
78,757 + GFF4838 0.66 -0.1
78,757 + GFF4838 0.66 +0.7
78,758 - GFF4838 0.66 +1.1
78,758 - GFF4838 0.66 +0.4
79,109 + -1.1
79,109 + +1.1
79,110 - -1.3
79,110 - +0.0
79,152 + +1.3
79,152 + -0.5
79,153 - -0.4
79,153 - +0.1
79,153 - -0.1
79,153 - -1.9
79,153 - -0.2
79,276 + GFF4839 0.10 +0.6
79,277 - GFF4839 0.11 +0.4
79,294 + GFF4839 0.12 +0.9
79,294 + GFF4839 0.12 -0.1
79,294 + GFF4839 0.12 +0.1
79,295 - GFF4839 0.12 +0.5
79,295 - GFF4839 0.12 -0.1

Or see this region's nucleotide sequence