Strain Fitness in Xanthobacter sp. DMC5 around GFF4833

Experiment: D,L-Lactate and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4830 and GFF4831 overlap by 4 nucleotidesGFF4831 and GFF4832 overlap by 13 nucleotidesGFF4832 and GFF4833 are separated by 5 nucleotidesGFF4833 and GFF4834 overlap by 1 nucleotides GFF4830 - hypothetical protein, at 70,086 to 71,294 GFF4830 GFF4831 - 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE, at 71,291 to 71,725 GFF4831 GFF4832 - hypothetical protein, at 71,713 to 72,201 GFF4832 GFF4833 - Adaptive-response sensory-kinase SasA, at 72,207 to 73,943 GFF4833 GFF4834 - Regulatory protein AtoC, at 73,943 to 75,337 GFF4834 Position (kb) 72 73 74Strain fitness (log2 ratio) -2 -1 0 1 2 3at 71.335 kb on + strand, within GFF4831at 71.335 kb on + strand, within GFF4831at 71.335 kb on + strand, within GFF4831at 71.336 kb on - strand, within GFF4831at 71.336 kb on - strand, within GFF4831at 71.472 kb on - strand, within GFF4831at 71.472 kb on - strand, within GFF4831at 71.472 kb on - strand, within GFF4831at 71.483 kb on + strand, within GFF4831at 71.512 kb on + strand, within GFF4831at 71.552 kb on + strand, within GFF4831at 71.552 kb on + strand, within GFF4831at 71.552 kb on + strand, within GFF4831at 71.552 kb on + strand, within GFF4831at 71.553 kb on - strand, within GFF4831at 71.553 kb on - strand, within GFF4831at 71.553 kb on - strand, within GFF4831at 71.553 kb on - strand, within GFF4831at 71.937 kb on + strand, within GFF4832at 72.011 kb on - strand, within GFF4832at 72.170 kb on + strandat 72.199 kb on + strandat 72.199 kb on + strandat 72.199 kb on + strandat 72.199 kb on + strandat 72.200 kb on - strandat 72.206 kb on + strandat 72.206 kb on + strandat 72.206 kb on + strandat 72.207 kb on - strandat 72.207 kb on - strandat 72.207 kb on - strandat 72.207 kb on - strandat 72.207 kb on - strandat 72.207 kb on - strandat 72.413 kb on - strand, within GFF4833at 72.413 kb on - strand, within GFF4833at 72.540 kb on + strand, within GFF4833at 72.541 kb on - strand, within GFF4833at 72.541 kb on - strand, within GFF4833at 72.541 kb on - strand, within GFF4833at 72.773 kb on - strand, within GFF4833at 72.773 kb on - strand, within GFF4833at 72.773 kb on - strand, within GFF4833at 73.156 kb on - strand, within GFF4833at 73.156 kb on - strand, within GFF4833at 73.239 kb on - strand, within GFF4833at 73.239 kb on - strand, within GFF4833at 73.467 kb on + strand, within GFF4833at 73.467 kb on + strand, within GFF4833at 73.467 kb on + strand, within GFF4833at 73.468 kb on - strand, within GFF4833at 73.624 kb on - strand, within GFF4833at 73.771 kb on + strandat 73.771 kb on + strandat 73.771 kb on + strandat 73.772 kb on - strandat 73.951 kb on + strandat 73.952 kb on - strandat 73.965 kb on + strandat 73.965 kb on + strandat 73.966 kb on - strandat 73.966 kb on - strandat 73.966 kb on - strandat 74.073 kb on - strandat 74.144 kb on - strand, within GFF4834at 74.198 kb on + strand, within GFF4834at 74.198 kb on + strand, within GFF4834at 74.198 kb on + strand, within GFF4834at 74.198 kb on + strand, within GFF4834at 74.198 kb on + strand, within GFF4834at 74.199 kb on - strand, within GFF4834at 74.199 kb on - strand, within GFF4834at 74.199 kb on - strand, within GFF4834at 74.199 kb on - strand, within GFF4834at 74.249 kb on + strand, within GFF4834at 74.249 kb on + strand, within GFF4834at 74.250 kb on - strand, within GFF4834at 74.250 kb on - strand, within GFF4834at 74.250 kb on - strand, within GFF4834at 74.250 kb on - strand, within GFF4834at 74.507 kb on + strand, within GFF4834at 74.507 kb on + strand, within GFF4834at 74.508 kb on - strand, within GFF4834at 74.852 kb on + strand, within GFF4834at 74.852 kb on + strand, within GFF4834at 74.852 kb on + strand, within GFF4834at 74.853 kb on - strand, within GFF4834at 74.853 kb on - strand, within GFF4834at 74.853 kb on - strand, within GFF4834at 74.853 kb on - strand, within GFF4834

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
remove
71,335 + GFF4831 0.10 -1.5
71,335 + GFF4831 0.10 -0.2
71,335 + GFF4831 0.10 +0.2
71,336 - GFF4831 0.10 -1.1
71,336 - GFF4831 0.10 +0.1
71,472 - GFF4831 0.42 +0.9
71,472 - GFF4831 0.42 -1.8
71,472 - GFF4831 0.42 -1.0
71,483 + GFF4831 0.44 +2.8
71,512 + GFF4831 0.51 -0.7
71,552 + GFF4831 0.60 +0.2
71,552 + GFF4831 0.60 +0.3
71,552 + GFF4831 0.60 -0.1
71,552 + GFF4831 0.60 -0.6
71,553 - GFF4831 0.60 +0.3
71,553 - GFF4831 0.60 -0.7
71,553 - GFF4831 0.60 +0.1
71,553 - GFF4831 0.60 +0.4
71,937 + GFF4832 0.46 +0.2
72,011 - GFF4832 0.61 +1.6
72,170 + +1.2
72,199 + +0.1
72,199 + +0.9
72,199 + +1.8
72,199 + -0.0
72,200 - +0.3
72,206 + -0.1
72,206 + +1.1
72,206 + +0.3
72,207 - -1.3
72,207 - -0.9
72,207 - +0.2
72,207 - +0.2
72,207 - +0.1
72,207 - -2.1
72,413 - GFF4833 0.12 +1.1
72,413 - GFF4833 0.12 -0.5
72,540 + GFF4833 0.19 +0.4
72,541 - GFF4833 0.19 -0.0
72,541 - GFF4833 0.19 -1.3
72,541 - GFF4833 0.19 -0.7
72,773 - GFF4833 0.33 -0.7
72,773 - GFF4833 0.33 +0.1
72,773 - GFF4833 0.33 +0.5
73,156 - GFF4833 0.55 +0.3
73,156 - GFF4833 0.55 +0.7
73,239 - GFF4833 0.59 -0.7
73,239 - GFF4833 0.59 -0.9
73,467 + GFF4833 0.73 +1.9
73,467 + GFF4833 0.73 -0.7
73,467 + GFF4833 0.73 +0.7
73,468 - GFF4833 0.73 -0.1
73,624 - GFF4833 0.82 +0.3
73,771 + +0.6
73,771 + -0.9
73,771 + -0.7
73,772 - +0.7
73,951 + -0.1
73,952 - +0.4
73,965 + +0.7
73,965 + -1.0
73,966 - +1.0
73,966 - -1.1
73,966 - -0.4
74,073 - -0.1
74,144 - GFF4834 0.14 +0.6
74,198 + GFF4834 0.18 +0.4
74,198 + GFF4834 0.18 -0.8
74,198 + GFF4834 0.18 -0.1
74,198 + GFF4834 0.18 +0.6
74,198 + GFF4834 0.18 +1.3
74,199 - GFF4834 0.18 +0.1
74,199 - GFF4834 0.18 -0.3
74,199 - GFF4834 0.18 +0.6
74,199 - GFF4834 0.18 +1.1
74,249 + GFF4834 0.22 -1.6
74,249 + GFF4834 0.22 -0.1
74,250 - GFF4834 0.22 +1.2
74,250 - GFF4834 0.22 -0.6
74,250 - GFF4834 0.22 +1.4
74,250 - GFF4834 0.22 -0.4
74,507 + GFF4834 0.40 -0.2
74,507 + GFF4834 0.40 -0.1
74,508 - GFF4834 0.41 +0.4
74,852 + GFF4834 0.65 -0.9
74,852 + GFF4834 0.65 +0.4
74,852 + GFF4834 0.65 +0.3
74,853 - GFF4834 0.65 -0.1
74,853 - GFF4834 0.65 -1.0
74,853 - GFF4834 0.65 +0.5
74,853 - GFF4834 0.65 +0.6

Or see this region's nucleotide sequence