Strain Fitness in Xanthobacter sp. DMC5 around GFF4822

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4820 and GFF4821 are separated by 10 nucleotidesGFF4821 and GFF4822 are separated by 203 nucleotidesGFF4822 and GFF4823 are separated by 227 nucleotides GFF4820 - hypothetical protein, at 62,124 to 62,234 GFF4820 GFF4821 - hypothetical protein, at 62,245 to 62,673 GFF4821 GFF4822 - hypothetical protein, at 62,877 to 63,263 GFF4822 GFF4823 - hypothetical protein, at 63,491 to 64,423 GFF4823 Position (kb) 62 63 64Strain fitness (log2 ratio) -2 -1 0 1 2at 61.902 kb on + strandat 61.938 kb on + strandat 62.166 kb on + strand, within GFF4820at 62.167 kb on - strand, within GFF4820at 62.167 kb on - strand, within GFF4820at 62.167 kb on - strand, within GFF4820at 62.167 kb on - strand, within GFF4820at 62.200 kb on + strand, within GFF4820at 62.206 kb on + strand, within GFF4820at 62.206 kb on + strand, within GFF4820at 62.206 kb on + strand, within GFF4820at 62.207 kb on - strand, within GFF4820at 62.207 kb on - strand, within GFF4820at 62.212 kb on - strand, within GFF4820at 62.212 kb on - strand, within GFF4820at 62.212 kb on - strand, within GFF4820at 62.212 kb on - strand, within GFF4820at 62.212 kb on - strand, within GFF4820at 62.220 kb on + strand, within GFF4820at 62.221 kb on - strand, within GFF4820at 62.270 kb on + strandat 62.312 kb on - strand, within GFF4821at 62.312 kb on - strand, within GFF4821at 62.413 kb on + strand, within GFF4821at 62.413 kb on + strand, within GFF4821at 62.413 kb on + strand, within GFF4821at 62.414 kb on - strand, within GFF4821at 62.414 kb on - strand, within GFF4821at 62.477 kb on - strand, within GFF4821at 62.671 kb on + strandat 62.672 kb on - strandat 62.672 kb on - strandat 62.672 kb on - strandat 62.828 kb on + strandat 62.828 kb on + strandat 62.829 kb on - strandat 62.883 kb on + strandat 62.883 kb on + strandat 62.883 kb on + strandat 62.883 kb on + strandat 62.884 kb on - strandat 62.884 kb on - strandat 63.078 kb on + strand, within GFF4822at 63.078 kb on + strand, within GFF4822at 63.078 kb on + strand, within GFF4822at 63.078 kb on + strand, within GFF4822at 63.078 kb on + strand, within GFF4822at 63.079 kb on - strand, within GFF4822at 63.121 kb on - strand, within GFF4822at 63.121 kb on - strand, within GFF4822at 63.160 kb on - strand, within GFF4822at 63.174 kb on + strand, within GFF4822at 63.174 kb on + strand, within GFF4822at 63.177 kb on - strand, within GFF4822at 63.262 kb on - strandat 63.349 kb on + strandat 63.349 kb on + strandat 63.350 kb on - strandat 63.350 kb on - strandat 63.351 kb on + strandat 63.352 kb on - strandat 63.352 kb on - strandat 63.352 kb on - strandat 63.352 kb on - strandat 63.404 kb on + strandat 63.404 kb on + strandat 63.492 kb on + strandat 63.492 kb on + strandat 63.493 kb on - strandat 63.528 kb on - strandat 63.555 kb on + strandat 63.555 kb on + strandat 63.556 kb on - strandat 63.556 kb on - strandat 63.639 kb on + strand, within GFF4823at 63.639 kb on + strand, within GFF4823at 63.639 kb on + strand, within GFF4823at 63.639 kb on + strand, within GFF4823at 63.639 kb on + strand, within GFF4823at 63.639 kb on + strand, within GFF4823at 63.640 kb on - strand, within GFF4823at 63.640 kb on - strand, within GFF4823at 63.640 kb on - strand, within GFF4823at 63.640 kb on - strand, within GFF4823at 63.640 kb on - strand, within GFF4823at 63.644 kb on - strand, within GFF4823at 63.762 kb on + strand, within GFF4823at 63.762 kb on + strand, within GFF4823at 63.763 kb on - strand, within GFF4823at 63.819 kb on + strand, within GFF4823at 63.819 kb on + strand, within GFF4823at 63.819 kb on + strand, within GFF4823at 63.820 kb on - strand, within GFF4823at 63.873 kb on + strand, within GFF4823at 63.873 kb on + strand, within GFF4823at 63.873 kb on + strand, within GFF4823at 63.874 kb on - strand, within GFF4823at 63.874 kb on - strand, within GFF4823at 63.874 kb on - strand, within GFF4823at 63.874 kb on - strand, within GFF4823at 63.874 kb on - strand, within GFF4823at 63.874 kb on - strand, within GFF4823at 63.874 kb on - strand, within GFF4823at 63.874 kb on - strand, within GFF4823at 63.918 kb on + strand, within GFF4823at 63.969 kb on + strand, within GFF4823at 63.970 kb on - strand, within GFF4823at 64.024 kb on + strand, within GFF4823at 64.025 kb on - strand, within GFF4823at 64.042 kb on + strand, within GFF4823at 64.043 kb on - strand, within GFF4823at 64.068 kb on + strand, within GFF4823at 64.068 kb on + strand, within GFF4823at 64.068 kb on + strand, within GFF4823at 64.068 kb on + strand, within GFF4823at 64.068 kb on + strand, within GFF4823at 64.069 kb on - strand, within GFF4823at 64.160 kb on - strand, within GFF4823at 64.160 kb on - strand, within GFF4823at 64.257 kb on + strand, within GFF4823at 64.258 kb on - strand, within GFF4823at 64.258 kb on - strand, within GFF4823

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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61,902 + -0.3
61,938 + +0.6
62,166 + GFF4820 0.38 -2.7
62,167 - GFF4820 0.39 +1.1
62,167 - GFF4820 0.39 +1.2
62,167 - GFF4820 0.39 -0.1
62,167 - GFF4820 0.39 -0.1
62,200 + GFF4820 0.68 -0.6
62,206 + GFF4820 0.74 +1.1
62,206 + GFF4820 0.74 -0.5
62,206 + GFF4820 0.74 -0.5
62,207 - GFF4820 0.75 +0.3
62,207 - GFF4820 0.75 +0.2
62,212 - GFF4820 0.79 -0.8
62,212 - GFF4820 0.79 -0.3
62,212 - GFF4820 0.79 +2.3
62,212 - GFF4820 0.79 +0.5
62,212 - GFF4820 0.79 +0.6
62,220 + GFF4820 0.86 -0.3
62,221 - GFF4820 0.87 +1.1
62,270 + +1.4
62,312 - GFF4821 0.16 +0.4
62,312 - GFF4821 0.16 -0.1
62,413 + GFF4821 0.39 +0.1
62,413 + GFF4821 0.39 -0.0
62,413 + GFF4821 0.39 -0.0
62,414 - GFF4821 0.39 -0.0
62,414 - GFF4821 0.39 +0.7
62,477 - GFF4821 0.54 -0.9
62,671 + -0.0
62,672 - +0.5
62,672 - +0.3
62,672 - +0.1
62,828 + -0.2
62,828 + +0.1
62,829 - -0.1
62,883 + -0.6
62,883 + +0.7
62,883 + +1.8
62,883 + -0.0
62,884 - +0.4
62,884 - +0.1
63,078 + GFF4822 0.52 -0.9
63,078 + GFF4822 0.52 +0.6
63,078 + GFF4822 0.52 -0.9
63,078 + GFF4822 0.52 -0.2
63,078 + GFF4822 0.52 +1.0
63,079 - GFF4822 0.52 +0.5
63,121 - GFF4822 0.63 -0.4
63,121 - GFF4822 0.63 -1.0
63,160 - GFF4822 0.73 +0.6
63,174 + GFF4822 0.77 -0.0
63,174 + GFF4822 0.77 +0.2
63,177 - GFF4822 0.78 -0.3
63,262 - -1.9
63,349 + -0.2
63,349 + -0.3
63,350 - -1.1
63,350 - -0.0
63,351 + +1.6
63,352 - -0.3
63,352 - -0.3
63,352 - -1.5
63,352 - -0.8
63,404 + -0.6
63,404 + +0.3
63,492 + -0.3
63,492 + -0.3
63,493 - +0.4
63,528 - +0.9
63,555 + +0.1
63,555 + -0.8
63,556 - +0.0
63,556 - +0.4
63,639 + GFF4823 0.16 +0.1
63,639 + GFF4823 0.16 +0.4
63,639 + GFF4823 0.16 -0.7
63,639 + GFF4823 0.16 +0.2
63,639 + GFF4823 0.16 +0.9
63,639 + GFF4823 0.16 +0.1
63,640 - GFF4823 0.16 -0.2
63,640 - GFF4823 0.16 +0.1
63,640 - GFF4823 0.16 -1.0
63,640 - GFF4823 0.16 -1.3
63,640 - GFF4823 0.16 -0.0
63,644 - GFF4823 0.16 -1.3
63,762 + GFF4823 0.29 +0.9
63,762 + GFF4823 0.29 +0.8
63,763 - GFF4823 0.29 -0.1
63,819 + GFF4823 0.35 +0.4
63,819 + GFF4823 0.35 +0.3
63,819 + GFF4823 0.35 +1.0
63,820 - GFF4823 0.35 +0.7
63,873 + GFF4823 0.41 -0.6
63,873 + GFF4823 0.41 +0.2
63,873 + GFF4823 0.41 -0.6
63,874 - GFF4823 0.41 -0.0
63,874 - GFF4823 0.41 -0.2
63,874 - GFF4823 0.41 +2.1
63,874 - GFF4823 0.41 -0.4
63,874 - GFF4823 0.41 +0.4
63,874 - GFF4823 0.41 -0.8
63,874 - GFF4823 0.41 -1.1
63,874 - GFF4823 0.41 +0.3
63,918 + GFF4823 0.46 -0.7
63,969 + GFF4823 0.51 +0.4
63,970 - GFF4823 0.51 +0.7
64,024 + GFF4823 0.57 +0.2
64,025 - GFF4823 0.57 -0.0
64,042 + GFF4823 0.59 +0.5
64,043 - GFF4823 0.59 -1.3
64,068 + GFF4823 0.62 -0.4
64,068 + GFF4823 0.62 +0.4
64,068 + GFF4823 0.62 -0.9
64,068 + GFF4823 0.62 +0.9
64,068 + GFF4823 0.62 +0.2
64,069 - GFF4823 0.62 -0.9
64,160 - GFF4823 0.72 +0.3
64,160 - GFF4823 0.72 +1.2
64,257 + GFF4823 0.82 -0.2
64,258 - GFF4823 0.82 -1.3
64,258 - GFF4823 0.82 +0.3

Or see this region's nucleotide sequence