Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF480 and GFF481 are separated by 329 nucleotides GFF481 and GFF482 are separated by 75 nucleotides GFF482 and GFF483 are separated by 238 nucleotides
GFF480 - hypothetical protein, at 507,233 to 507,382
GFF480
GFF481 - Phyllosphere-induced regulator PhyR, at 507,712 to 508,074
GFF481
GFF482 - hypothetical protein, at 508,150 to 508,317
GFF482
GFF483 - Sensor histidine kinase RcsC, at 508,556 to 512,827
GFF483
Position (kb) 508
509 Strain fitness (log2 ratio) -2
-1
0
1
2 at 507.235 kb on - strand at 507.306 kb on + strand, within GFF480 at 507.306 kb on + strand, within GFF480 at 507.307 kb on - strand, within GFF480 at 507.344 kb on + strand, within GFF480 at 507.345 kb on - strand, within GFF480 at 507.360 kb on + strand, within GFF480 at 507.361 kb on - strand, within GFF480 at 507.361 kb on - strand, within GFF480 at 507.368 kb on - strand at 507.368 kb on - strand at 507.474 kb on + strand at 507.475 kb on - strand at 507.475 kb on - strand at 507.475 kb on - strand at 507.622 kb on + strand at 507.622 kb on + strand at 507.623 kb on - strand at 507.691 kb on + strand at 507.692 kb on - strand at 507.692 kb on - strand at 507.877 kb on + strand, within GFF481 at 507.878 kb on - strand, within GFF481 at 507.878 kb on - strand, within GFF481 at 507.981 kb on + strand, within GFF481 at 507.981 kb on + strand, within GFF481 at 507.982 kb on - strand, within GFF481 at 508.262 kb on + strand, within GFF482 at 508.288 kb on - strand, within GFF482 at 508.303 kb on + strand at 508.458 kb on + strand at 508.458 kb on + strand at 508.458 kb on + strand at 508.459 kb on - strand at 508.459 kb on - strand at 508.558 kb on - strand at 508.558 kb on - strand at 508.558 kb on - strand at 508.797 kb on - strand at 508.797 kb on - strand at 508.939 kb on + strand at 508.940 kb on - strand at 509.016 kb on + strand, within GFF483 at 509.017 kb on - strand, within GFF483 at 509.017 kb on - strand, within GFF483 at 509.017 kb on - strand, within GFF483 at 509.017 kb on - strand, within GFF483 at 509.017 kb on - strand, within GFF483 at 509.085 kb on + strand, within GFF483 at 509.085 kb on + strand, within GFF483 at 509.085 kb on + strand, within GFF483 at 509.085 kb on + strand, within GFF483 at 509.128 kb on + strand, within GFF483
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 507,235 - +1.1 507,306 + GFF480 0.49 -0.6 507,306 + GFF480 0.49 +0.7 507,307 - GFF480 0.49 +1.7 507,344 + GFF480 0.74 +0.7 507,345 - GFF480 0.75 -0.4 507,360 + GFF480 0.85 -1.2 507,361 - GFF480 0.85 -0.3 507,361 - GFF480 0.85 +0.2 507,368 - +0.4 507,368 - +0.5 507,474 + +0.2 507,475 - -0.2 507,475 - +0.3 507,475 - -1.1 507,622 + +1.1 507,622 + -1.3 507,623 - -0.9 507,691 + +1.0 507,692 - +0.4 507,692 - -0.8 507,877 + GFF481 0.45 -0.8 507,878 - GFF481 0.46 +0.6 507,878 - GFF481 0.46 +0.8 507,981 + GFF481 0.74 -1.2 507,981 + GFF481 0.74 +0.1 507,982 - GFF481 0.74 +0.5 508,262 + GFF482 0.67 +0.3 508,288 - GFF482 0.82 -1.9 508,303 + +0.7 508,458 + +0.6 508,458 + +0.0 508,458 + +1.9 508,459 - -0.2 508,459 - +0.7 508,558 - +0.8 508,558 - -1.0 508,558 - +0.0 508,797 - -0.9 508,797 - -1.0 508,939 + +0.1 508,940 - -0.4 509,016 + GFF483 0.11 +0.8 509,017 - GFF483 0.11 +0.2 509,017 - GFF483 0.11 +0.4 509,017 - GFF483 0.11 +0.9 509,017 - GFF483 0.11 -2.3 509,017 - GFF483 0.11 -0.3 509,085 + GFF483 0.12 +0.2 509,085 + GFF483 0.12 -0.7 509,085 + GFF483 0.12 -1.1 509,085 + GFF483 0.12 -0.5 509,128 + GFF483 0.13 -1.9
Or see this region's nucleotide sequence