Strain Fitness in Xanthobacter sp. DMC5 around GFF4814

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4812 and GFF4813 overlap by 1 nucleotidesGFF4813 and GFF4814 are separated by 58 nucleotidesGFF4814 and GFF4815 overlap by 4 nucleotides GFF4812 - HTH-type transcriptional repressor AllR, at 53,396 to 54,244 GFF4812 GFF4813 - hypothetical protein, at 54,244 to 54,639 GFF4813 GFF4814 - hypothetical protein, at 54,698 to 55,126 GFF4814 GFF4815 - Acyl-CoA dehydrogenase, at 55,123 to 56,280 GFF4815 Position (kb) 54 55 56Strain fitness (log2 ratio) -2 -1 0 1 2at 53.853 kb on - strand, within GFF4812at 53.853 kb on - strand, within GFF4812at 53.853 kb on - strand, within GFF4812at 53.952 kb on + strand, within GFF4812at 53.952 kb on + strand, within GFF4812at 53.952 kb on + strand, within GFF4812at 53.952 kb on + strand, within GFF4812at 53.952 kb on + strand, within GFF4812at 53.953 kb on - strand, within GFF4812at 53.975 kb on + strand, within GFF4812at 54.254 kb on + strandat 54.254 kb on + strandat 54.254 kb on + strandat 54.255 kb on - strandat 54.255 kb on - strandat 54.355 kb on + strand, within GFF4813at 54.418 kb on + strand, within GFF4813at 54.418 kb on + strand, within GFF4813at 54.418 kb on + strand, within GFF4813at 54.418 kb on + strand, within GFF4813at 54.419 kb on - strand, within GFF4813at 54.419 kb on - strand, within GFF4813at 54.419 kb on - strand, within GFF4813at 54.638 kb on - strandat 54.638 kb on - strandat 54.780 kb on - strand, within GFF4814at 54.969 kb on + strand, within GFF4814at 55.022 kb on + strand, within GFF4814at 55.022 kb on + strand, within GFF4814at 55.041 kb on + strand, within GFF4814at 55.122 kb on + strandat 55.122 kb on + strandat 55.122 kb on + strandat 55.122 kb on + strandat 55.122 kb on + strandat 55.123 kb on - strandat 55.123 kb on - strandat 55.123 kb on - strandat 55.304 kb on - strand, within GFF4815at 55.398 kb on + strand, within GFF4815at 55.398 kb on + strand, within GFF4815at 55.399 kb on - strand, within GFF4815at 55.399 kb on - strand, within GFF4815at 55.456 kb on + strand, within GFF4815at 55.456 kb on + strand, within GFF4815at 55.456 kb on + strand, within GFF4815at 55.456 kb on + strand, within GFF4815at 55.457 kb on - strand, within GFF4815at 55.457 kb on - strand, within GFF4815at 55.570 kb on + strand, within GFF4815at 55.571 kb on - strand, within GFF4815at 55.571 kb on - strand, within GFF4815at 55.594 kb on + strand, within GFF4815at 55.594 kb on + strand, within GFF4815at 55.594 kb on + strand, within GFF4815at 55.594 kb on + strand, within GFF4815at 55.594 kb on + strand, within GFF4815at 55.594 kb on + strand, within GFF4815at 55.595 kb on - strand, within GFF4815at 55.710 kb on + strand, within GFF4815at 55.710 kb on + strand, within GFF4815at 55.710 kb on + strand, within GFF4815at 55.711 kb on - strand, within GFF4815at 55.711 kb on - strand, within GFF4815at 55.711 kb on - strand, within GFF4815at 55.711 kb on - strand, within GFF4815at 55.769 kb on + strand, within GFF4815at 55.769 kb on + strand, within GFF4815at 55.769 kb on + strand, within GFF4815at 55.769 kb on + strand, within GFF4815at 55.769 kb on + strand, within GFF4815at 55.770 kb on - strand, within GFF4815at 55.770 kb on - strand, within GFF4815at 55.967 kb on - strand, within GFF4815at 56.008 kb on + strand, within GFF4815at 56.009 kb on - strand, within GFF4815at 56.009 kb on - strand, within GFF4815at 56.050 kb on + strand, within GFF4815at 56.051 kb on - strand, within GFF4815at 56.051 kb on - strand, within GFF4815at 56.051 kb on - strand, within GFF4815at 56.095 kb on + strand, within GFF4815at 56.096 kb on - strand, within GFF4815at 56.096 kb on - strand, within GFF4815at 56.096 kb on - strand, within GFF4815

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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53,853 - GFF4812 0.54 -0.8
53,853 - GFF4812 0.54 +0.3
53,853 - GFF4812 0.54 +2.4
53,952 + GFF4812 0.65 -0.4
53,952 + GFF4812 0.65 +1.4
53,952 + GFF4812 0.65 -0.4
53,952 + GFF4812 0.65 -0.3
53,952 + GFF4812 0.65 -0.4
53,953 - GFF4812 0.66 +0.1
53,975 + GFF4812 0.68 +0.6
54,254 + -1.1
54,254 + -1.3
54,254 + -0.6
54,255 - +1.2
54,255 - +0.7
54,355 + GFF4813 0.28 -1.6
54,418 + GFF4813 0.44 -0.9
54,418 + GFF4813 0.44 +0.3
54,418 + GFF4813 0.44 -1.0
54,418 + GFF4813 0.44 +0.2
54,419 - GFF4813 0.44 -0.1
54,419 - GFF4813 0.44 -0.3
54,419 - GFF4813 0.44 -0.6
54,638 - -0.2
54,638 - -0.3
54,780 - GFF4814 0.19 -1.7
54,969 + GFF4814 0.63 -0.4
55,022 + GFF4814 0.76 -0.1
55,022 + GFF4814 0.76 -0.5
55,041 + GFF4814 0.80 -0.4
55,122 + +0.0
55,122 + -0.9
55,122 + -1.7
55,122 + -1.3
55,122 + +0.6
55,123 - +0.4
55,123 - +0.1
55,123 - -0.4
55,304 - GFF4815 0.16 +0.1
55,398 + GFF4815 0.24 -0.4
55,398 + GFF4815 0.24 -1.2
55,399 - GFF4815 0.24 -0.0
55,399 - GFF4815 0.24 +0.2
55,456 + GFF4815 0.29 -0.7
55,456 + GFF4815 0.29 -0.4
55,456 + GFF4815 0.29 +0.1
55,456 + GFF4815 0.29 +0.1
55,457 - GFF4815 0.29 +0.4
55,457 - GFF4815 0.29 +0.9
55,570 + GFF4815 0.39 -0.1
55,571 - GFF4815 0.39 +1.5
55,571 - GFF4815 0.39 +0.9
55,594 + GFF4815 0.41 +0.7
55,594 + GFF4815 0.41 +0.6
55,594 + GFF4815 0.41 +0.9
55,594 + GFF4815 0.41 -0.3
55,594 + GFF4815 0.41 +0.7
55,594 + GFF4815 0.41 +1.0
55,595 - GFF4815 0.41 -0.9
55,710 + GFF4815 0.51 +1.2
55,710 + GFF4815 0.51 +0.0
55,710 + GFF4815 0.51 -1.4
55,711 - GFF4815 0.51 -0.8
55,711 - GFF4815 0.51 +0.0
55,711 - GFF4815 0.51 +0.3
55,711 - GFF4815 0.51 -0.6
55,769 + GFF4815 0.56 +0.5
55,769 + GFF4815 0.56 +0.2
55,769 + GFF4815 0.56 +0.6
55,769 + GFF4815 0.56 +0.3
55,769 + GFF4815 0.56 -1.3
55,770 - GFF4815 0.56 -1.8
55,770 - GFF4815 0.56 -1.5
55,967 - GFF4815 0.73 +0.4
56,008 + GFF4815 0.76 +0.9
56,009 - GFF4815 0.77 +0.9
56,009 - GFF4815 0.77 -0.1
56,050 + GFF4815 0.80 -1.8
56,051 - GFF4815 0.80 -0.5
56,051 - GFF4815 0.80 -0.3
56,051 - GFF4815 0.80 -0.2
56,095 + GFF4815 0.84 -0.0
56,096 - GFF4815 0.84 -0.4
56,096 - GFF4815 0.84 -0.6
56,096 - GFF4815 0.84 +0.4

Or see this region's nucleotide sequence