Strain Fitness in Xanthobacter sp. DMC5 around GFF4810

Experiment: D,L-Lactate and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4808 and GFF4809 overlap by 8 nucleotidesGFF4809 and GFF4810 are separated by 105 nucleotidesGFF4810 and GFF4811 are separated by 47 nucleotides GFF4808 - hypothetical protein, at 48,880 to 49,803 GFF4808 GFF4809 - High-affinity branched-chain amino acid transport system permease protein LivH, at 49,796 to 50,671 GFF4809 GFF4810 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 50,777 to 51,991 GFF4810 GFF4811 - Succinyl-CoA--L-malate CoA-transferase beta subunit, at 52,039 to 53,286 GFF4811 Position (kb) 50 51 52Strain fitness (log2 ratio) -2 -1 0 1 2at 49.781 kb on + strandat 49.887 kb on + strand, within GFF4809at 49.887 kb on + strand, within GFF4809at 49.888 kb on - strand, within GFF4809at 49.888 kb on - strand, within GFF4809at 49.936 kb on + strand, within GFF4809at 49.936 kb on + strand, within GFF4809at 49.937 kb on - strand, within GFF4809at 49.937 kb on - strand, within GFF4809at 50.103 kb on + strand, within GFF4809at 50.103 kb on + strand, within GFF4809at 50.103 kb on + strand, within GFF4809at 50.104 kb on - strand, within GFF4809at 50.104 kb on - strand, within GFF4809at 50.190 kb on + strand, within GFF4809at 50.190 kb on + strand, within GFF4809at 50.191 kb on - strand, within GFF4809at 50.191 kb on - strand, within GFF4809at 50.191 kb on - strand, within GFF4809at 50.191 kb on - strand, within GFF4809at 50.191 kb on - strand, within GFF4809at 50.191 kb on - strand, within GFF4809at 50.191 kb on - strand, within GFF4809at 50.246 kb on + strand, within GFF4809at 50.246 kb on + strand, within GFF4809at 50.246 kb on + strand, within GFF4809at 50.282 kb on + strand, within GFF4809at 50.412 kb on + strand, within GFF4809at 50.412 kb on + strand, within GFF4809at 50.412 kb on + strand, within GFF4809at 50.412 kb on + strand, within GFF4809at 50.412 kb on + strand, within GFF4809at 50.412 kb on + strand, within GFF4809at 50.413 kb on - strand, within GFF4809at 50.413 kb on - strand, within GFF4809at 50.413 kb on - strand, within GFF4809at 50.413 kb on - strand, within GFF4809at 50.413 kb on - strand, within GFF4809at 50.413 kb on - strand, within GFF4809at 50.413 kb on - strand, within GFF4809at 50.413 kb on - strand, within GFF4809at 50.413 kb on - strand, within GFF4809at 50.413 kb on - strand, within GFF4809at 50.413 kb on - strand, within GFF4809at 50.469 kb on + strand, within GFF4809at 50.469 kb on + strand, within GFF4809at 50.619 kb on + strandat 50.619 kb on + strandat 50.619 kb on + strandat 50.620 kb on - strandat 50.620 kb on - strandat 50.620 kb on - strandat 50.657 kb on + strandat 50.657 kb on + strandat 50.657 kb on + strandat 50.874 kb on + strandat 50.874 kb on + strandat 50.874 kb on + strandat 50.874 kb on + strandat 50.874 kb on + strandat 50.875 kb on - strandat 50.875 kb on - strandat 50.875 kb on - strandat 50.875 kb on - strandat 50.875 kb on - strandat 50.878 kb on + strandat 50.879 kb on - strandat 50.879 kb on - strandat 50.889 kb on + strandat 50.910 kb on + strand, within GFF4810at 50.910 kb on + strand, within GFF4810at 50.911 kb on - strand, within GFF4810at 51.000 kb on + strand, within GFF4810at 51.012 kb on + strand, within GFF4810at 51.012 kb on + strand, within GFF4810at 51.013 kb on - strand, within GFF4810at 51.013 kb on - strand, within GFF4810at 51.013 kb on - strand, within GFF4810at 51.013 kb on - strand, within GFF4810at 51.127 kb on + strand, within GFF4810at 51.127 kb on + strand, within GFF4810at 51.127 kb on + strand, within GFF4810at 51.128 kb on - strand, within GFF4810at 51.128 kb on - strand, within GFF4810at 51.129 kb on + strand, within GFF4810at 51.129 kb on + strand, within GFF4810at 51.129 kb on + strand, within GFF4810at 51.129 kb on + strand, within GFF4810at 51.129 kb on + strand, within GFF4810at 51.129 kb on + strand, within GFF4810at 51.129 kb on + strand, within GFF4810at 51.129 kb on + strand, within GFF4810at 51.130 kb on - strand, within GFF4810at 51.130 kb on - strand, within GFF4810at 51.130 kb on - strand, within GFF4810at 51.342 kb on + strand, within GFF4810at 51.343 kb on - strand, within GFF4810at 51.365 kb on + strand, within GFF4810at 51.366 kb on - strand, within GFF4810at 51.447 kb on + strand, within GFF4810at 51.447 kb on + strand, within GFF4810at 51.651 kb on + strand, within GFF4810at 51.651 kb on + strand, within GFF4810at 51.651 kb on + strand, within GFF4810at 51.652 kb on - strand, within GFF4810at 51.652 kb on - strand, within GFF4810at 51.711 kb on + strand, within GFF4810at 51.711 kb on + strand, within GFF4810at 51.711 kb on + strand, within GFF4810at 51.712 kb on - strand, within GFF4810at 51.712 kb on - strand, within GFF4810at 51.723 kb on + strand, within GFF4810at 51.744 kb on + strand, within GFF4810at 51.744 kb on + strand, within GFF4810at 51.745 kb on - strand, within GFF4810at 51.764 kb on - strand, within GFF4810at 51.764 kb on - strand, within GFF4810at 51.824 kb on - strand, within GFF4810at 51.950 kb on - strandat 52.001 kb on - strandat 52.040 kb on + strandat 52.040 kb on + strandat 52.040 kb on + strandat 52.040 kb on + strandat 52.040 kb on + strandat 52.041 kb on - strandat 52.041 kb on - strandat 52.111 kb on + strandat 52.111 kb on + strandat 52.111 kb on + strandat 52.112 kb on - strandat 52.112 kb on - strandat 52.122 kb on - strandat 52.125 kb on + strandat 52.407 kb on + strand, within GFF4811at 52.407 kb on + strand, within GFF4811at 52.407 kb on + strand, within GFF4811at 52.407 kb on + strand, within GFF4811at 52.408 kb on - strand, within GFF4811at 52.408 kb on - strand, within GFF4811at 52.408 kb on - strand, within GFF4811at 52.408 kb on - strand, within GFF4811at 52.611 kb on + strand, within GFF4811at 52.611 kb on + strand, within GFF4811at 52.611 kb on + strand, within GFF4811at 52.611 kb on + strand, within GFF4811at 52.727 kb on + strand, within GFF4811at 52.728 kb on - strand, within GFF4811at 52.728 kb on - strand, within GFF4811at 52.728 kb on - strand, within GFF4811at 52.728 kb on - strand, within GFF4811at 52.736 kb on + strand, within GFF4811at 52.736 kb on + strand, within GFF4811at 52.736 kb on + strand, within GFF4811at 52.736 kb on + strand, within GFF4811at 52.736 kb on + strand, within GFF4811at 52.737 kb on - strand, within GFF4811at 52.737 kb on - strand, within GFF4811at 52.737 kb on - strand, within GFF4811at 52.737 kb on - strand, within GFF4811at 52.737 kb on - strand, within GFF4811at 52.737 kb on - strand, within GFF4811at 52.875 kb on + strand, within GFF4811at 52.875 kb on + strand, within GFF4811at 52.875 kb on + strand, within GFF4811at 52.876 kb on - strand, within GFF4811at 52.876 kb on - strand, within GFF4811at 52.878 kb on + strand, within GFF4811at 52.879 kb on - strand, within GFF4811at 52.879 kb on - strand, within GFF4811at 52.907 kb on + strand, within GFF4811

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
remove
49,781 + +1.1
49,887 + GFF4809 0.10 +0.6
49,887 + GFF4809 0.10 +0.6
49,888 - GFF4809 0.11 +0.3
49,888 - GFF4809 0.11 +1.6
49,936 + GFF4809 0.16 +0.5
49,936 + GFF4809 0.16 -1.1
49,937 - GFF4809 0.16 -0.7
49,937 - GFF4809 0.16 +0.4
50,103 + GFF4809 0.35 +0.5
50,103 + GFF4809 0.35 -0.2
50,103 + GFF4809 0.35 +0.3
50,104 - GFF4809 0.35 -0.1
50,104 - GFF4809 0.35 -0.8
50,190 + GFF4809 0.45 +1.0
50,190 + GFF4809 0.45 +1.1
50,191 - GFF4809 0.45 +0.3
50,191 - GFF4809 0.45 +0.1
50,191 - GFF4809 0.45 -0.1
50,191 - GFF4809 0.45 +0.2
50,191 - GFF4809 0.45 -0.6
50,191 - GFF4809 0.45 +0.1
50,191 - GFF4809 0.45 -0.8
50,246 + GFF4809 0.51 +1.4
50,246 + GFF4809 0.51 -0.6
50,246 + GFF4809 0.51 +0.4
50,282 + GFF4809 0.55 -0.6
50,412 + GFF4809 0.70 -2.4
50,412 + GFF4809 0.70 -0.7
50,412 + GFF4809 0.70 -0.5
50,412 + GFF4809 0.70 -1.3
50,412 + GFF4809 0.70 -2.7
50,412 + GFF4809 0.70 +1.0
50,413 - GFF4809 0.70 +0.7
50,413 - GFF4809 0.70 +0.7
50,413 - GFF4809 0.70 +0.2
50,413 - GFF4809 0.70 -2.3
50,413 - GFF4809 0.70 -0.1
50,413 - GFF4809 0.70 +0.3
50,413 - GFF4809 0.70 +0.2
50,413 - GFF4809 0.70 -0.3
50,413 - GFF4809 0.70 +0.9
50,413 - GFF4809 0.70 +0.3
50,413 - GFF4809 0.70 -0.0
50,469 + GFF4809 0.77 +2.4
50,469 + GFF4809 0.77 -0.1
50,619 + +0.1
50,619 + -0.3
50,619 + +0.2
50,620 - -0.2
50,620 - -2.3
50,620 - +0.1
50,657 + -0.6
50,657 + -1.4
50,657 + +0.3
50,874 + -0.3
50,874 + -0.7
50,874 + -0.3
50,874 + -0.7
50,874 + -0.4
50,875 - +1.2
50,875 - -0.6
50,875 - +0.2
50,875 - +1.2
50,875 - +0.5
50,878 + -1.7
50,879 - +0.4
50,879 - +0.2
50,889 + -0.3
50,910 + GFF4810 0.11 -1.0
50,910 + GFF4810 0.11 -0.2
50,911 - GFF4810 0.11 +0.8
51,000 + GFF4810 0.18 -2.0
51,012 + GFF4810 0.19 +0.9
51,012 + GFF4810 0.19 -1.0
51,013 - GFF4810 0.19 +1.2
51,013 - GFF4810 0.19 +0.2
51,013 - GFF4810 0.19 -0.4
51,013 - GFF4810 0.19 -0.5
51,127 + GFF4810 0.29 +0.3
51,127 + GFF4810 0.29 -0.4
51,127 + GFF4810 0.29 -0.9
51,128 - GFF4810 0.29 -0.8
51,128 - GFF4810 0.29 -0.4
51,129 + GFF4810 0.29 -0.0
51,129 + GFF4810 0.29 +1.7
51,129 + GFF4810 0.29 +0.4
51,129 + GFF4810 0.29 -0.6
51,129 + GFF4810 0.29 -0.1
51,129 + GFF4810 0.29 -1.2
51,129 + GFF4810 0.29 -2.1
51,129 + GFF4810 0.29 +0.4
51,130 - GFF4810 0.29 -1.4
51,130 - GFF4810 0.29 +1.4
51,130 - GFF4810 0.29 +0.9
51,342 + GFF4810 0.47 +2.0
51,343 - GFF4810 0.47 +0.6
51,365 + GFF4810 0.48 -0.5
51,366 - GFF4810 0.48 -0.4
51,447 + GFF4810 0.55 +0.1
51,447 + GFF4810 0.55 +0.6
51,651 + GFF4810 0.72 +1.4
51,651 + GFF4810 0.72 -0.4
51,651 + GFF4810 0.72 +0.6
51,652 - GFF4810 0.72 -0.2
51,652 - GFF4810 0.72 +0.1
51,711 + GFF4810 0.77 -1.1
51,711 + GFF4810 0.77 +0.3
51,711 + GFF4810 0.77 +1.6
51,712 - GFF4810 0.77 -0.5
51,712 - GFF4810 0.77 +0.6
51,723 + GFF4810 0.78 +0.3
51,744 + GFF4810 0.80 +0.2
51,744 + GFF4810 0.80 +1.4
51,745 - GFF4810 0.80 +1.1
51,764 - GFF4810 0.81 -0.3
51,764 - GFF4810 0.81 -0.0
51,824 - GFF4810 0.86 +0.3
51,950 - -0.3
52,001 - -0.1
52,040 + -1.4
52,040 + +0.7
52,040 + -0.9
52,040 + +0.7
52,040 + +0.4
52,041 - -0.3
52,041 - +0.9
52,111 + +0.1
52,111 + +0.1
52,111 + +1.2
52,112 - -0.6
52,112 - +0.5
52,122 - +0.5
52,125 + -0.6
52,407 + GFF4811 0.29 +0.6
52,407 + GFF4811 0.29 -0.1
52,407 + GFF4811 0.29 +0.9
52,407 + GFF4811 0.29 -0.2
52,408 - GFF4811 0.30 +0.2
52,408 - GFF4811 0.30 -0.1
52,408 - GFF4811 0.30 +0.2
52,408 - GFF4811 0.30 +0.9
52,611 + GFF4811 0.46 -0.2
52,611 + GFF4811 0.46 -0.4
52,611 + GFF4811 0.46 +1.7
52,611 + GFF4811 0.46 +0.7
52,727 + GFF4811 0.55 -0.6
52,728 - GFF4811 0.55 -0.3
52,728 - GFF4811 0.55 -0.4
52,728 - GFF4811 0.55 +0.6
52,728 - GFF4811 0.55 -1.0
52,736 + GFF4811 0.56 -0.5
52,736 + GFF4811 0.56 +0.7
52,736 + GFF4811 0.56 -1.3
52,736 + GFF4811 0.56 +0.2
52,736 + GFF4811 0.56 +0.2
52,737 - GFF4811 0.56 -0.1
52,737 - GFF4811 0.56 -0.1
52,737 - GFF4811 0.56 -0.2
52,737 - GFF4811 0.56 -1.6
52,737 - GFF4811 0.56 -0.5
52,737 - GFF4811 0.56 +0.7
52,875 + GFF4811 0.67 -0.1
52,875 + GFF4811 0.67 -0.9
52,875 + GFF4811 0.67 -0.6
52,876 - GFF4811 0.67 +0.9
52,876 - GFF4811 0.67 -0.9
52,878 + GFF4811 0.67 -0.9
52,879 - GFF4811 0.67 -1.1
52,879 - GFF4811 0.67 +0.2
52,907 + GFF4811 0.70 +0.3

Or see this region's nucleotide sequence