Strain Fitness in Xanthobacter sp. DMC5 around GFF4797

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4795 and GFF4796 overlap by 1 nucleotidesGFF4796 and GFF4797 overlap by 4 nucleotidesGFF4797 and GFF4798 overlap by 1 nucleotidesGFF4798 and GFF4799 overlap by 1 nucleotides GFF4795 - Electron transfer flavoprotein subunit alpha, at 35,534 to 36,478 GFF4795 GFF4796 - Electron transfer flavoprotein subunit beta, at 36,478 to 37,227 GFF4796 GFF4797 - Citrate lyase subunit beta-like protein, at 37,224 to 38,063 GFF4797 GFF4798 - Mesaconyl-C(4)-CoA hydratase, at 38,063 to 38,917 GFF4798 GFF4799 - Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase, at 38,917 to 40,071 GFF4799 Position (kb) 37 38 39Strain fitness (log2 ratio) -2 -1 0 1 2at 36.228 kb on + strand, within GFF4795at 36.229 kb on - strand, within GFF4795at 36.229 kb on - strand, within GFF4795at 36.229 kb on - strand, within GFF4795at 36.229 kb on - strand, within GFF4795at 36.285 kb on + strand, within GFF4795at 36.285 kb on + strand, within GFF4795at 36.285 kb on + strand, within GFF4795at 36.285 kb on + strand, within GFF4795at 36.286 kb on - strand, within GFF4795at 36.286 kb on - strand, within GFF4795at 36.286 kb on - strand, within GFF4795at 36.286 kb on - strand, within GFF4795at 36.675 kb on - strand, within GFF4796at 36.675 kb on - strand, within GFF4796at 37.182 kb on + strandat 37.182 kb on + strandat 37.182 kb on + strandat 37.483 kb on + strand, within GFF4797at 37.484 kb on - strand, within GFF4797at 37.484 kb on - strand, within GFF4797at 37.484 kb on - strand, within GFF4797at 37.526 kb on + strand, within GFF4797at 37.527 kb on - strand, within GFF4797at 37.661 kb on + strand, within GFF4797at 37.662 kb on - strand, within GFF4797at 37.662 kb on - strand, within GFF4797at 38.086 kb on + strandat 38.086 kb on + strandat 38.086 kb on + strandat 38.087 kb on - strandat 38.087 kb on - strandat 38.235 kb on + strand, within GFF4798at 38.235 kb on + strand, within GFF4798at 38.235 kb on + strand, within GFF4798at 38.235 kb on + strand, within GFF4798at 38.235 kb on + strand, within GFF4798at 38.236 kb on - strand, within GFF4798at 38.236 kb on - strand, within GFF4798at 38.307 kb on + strand, within GFF4798at 38.308 kb on - strand, within GFF4798at 38.308 kb on - strand, within GFF4798at 38.319 kb on + strand, within GFF4798at 38.319 kb on + strand, within GFF4798at 38.458 kb on - strand, within GFF4798at 38.554 kb on + strand, within GFF4798at 38.555 kb on - strand, within GFF4798at 38.555 kb on - strand, within GFF4798at 38.572 kb on + strand, within GFF4798at 38.572 kb on + strand, within GFF4798at 38.572 kb on + strand, within GFF4798at 38.572 kb on + strand, within GFF4798at 38.811 kb on + strand, within GFF4798at 38.811 kb on + strand, within GFF4798at 38.811 kb on + strand, within GFF4798at 38.812 kb on - strand, within GFF4798at 38.845 kb on + strandat 38.845 kb on + strandat 38.846 kb on - strandat 38.886 kb on - strandat 38.921 kb on + strandat 38.921 kb on + strandat 38.922 kb on - strandat 38.922 kb on - strandat 38.996 kb on + strandat 39.032 kb on + strandat 39.032 kb on + strandat 39.033 kb on - strand, within GFF4799at 39.033 kb on - strand, within GFF4799at 39.033 kb on - strand, within GFF4799

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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36,228 + GFF4795 0.73 -0.2
36,229 - GFF4795 0.74 +0.3
36,229 - GFF4795 0.74 +1.4
36,229 - GFF4795 0.74 +0.1
36,229 - GFF4795 0.74 +1.4
36,285 + GFF4795 0.79 -0.4
36,285 + GFF4795 0.79 +0.1
36,285 + GFF4795 0.79 -1.0
36,285 + GFF4795 0.79 -1.0
36,286 - GFF4795 0.80 -0.0
36,286 - GFF4795 0.80 -0.5
36,286 - GFF4795 0.80 +0.9
36,286 - GFF4795 0.80 +1.1
36,675 - GFF4796 0.26 -0.9
36,675 - GFF4796 0.26 +0.0
37,182 + +0.1
37,182 + -0.3
37,182 + -2.0
37,483 + GFF4797 0.31 +1.2
37,484 - GFF4797 0.31 +2.4
37,484 - GFF4797 0.31 +1.1
37,484 - GFF4797 0.31 -0.5
37,526 + GFF4797 0.36 +0.2
37,527 - GFF4797 0.36 -0.8
37,661 + GFF4797 0.52 -1.0
37,662 - GFF4797 0.52 +0.7
37,662 - GFF4797 0.52 +1.0
38,086 + -0.6
38,086 + +0.4
38,086 + -0.2
38,087 - -0.4
38,087 - +0.6
38,235 + GFF4798 0.20 +0.3
38,235 + GFF4798 0.20 +0.3
38,235 + GFF4798 0.20 +0.1
38,235 + GFF4798 0.20 +1.3
38,235 + GFF4798 0.20 +1.1
38,236 - GFF4798 0.20 +0.6
38,236 - GFF4798 0.20 -0.2
38,307 + GFF4798 0.29 -1.8
38,308 - GFF4798 0.29 -0.0
38,308 - GFF4798 0.29 +0.9
38,319 + GFF4798 0.30 -1.1
38,319 + GFF4798 0.30 +1.2
38,458 - GFF4798 0.46 -0.7
38,554 + GFF4798 0.57 -0.2
38,555 - GFF4798 0.58 +0.7
38,555 - GFF4798 0.58 +0.4
38,572 + GFF4798 0.60 -1.0
38,572 + GFF4798 0.60 +0.2
38,572 + GFF4798 0.60 +0.3
38,572 + GFF4798 0.60 -0.1
38,811 + GFF4798 0.87 -1.1
38,811 + GFF4798 0.87 -0.7
38,811 + GFF4798 0.87 -0.0
38,812 - GFF4798 0.88 -0.8
38,845 + +0.3
38,845 + -0.1
38,846 - +0.4
38,886 - +0.8
38,921 + -0.1
38,921 + +0.1
38,922 - -0.6
38,922 - +0.6
38,996 + -0.1
39,032 + -0.7
39,032 + -0.0
39,033 - GFF4799 0.10 +0.4
39,033 - GFF4799 0.10 +0.3
39,033 - GFF4799 0.10 -0.1

Or see this region's nucleotide sequence