Strain Fitness in Xanthobacter sp. DMC5 around GFF4794

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4792 and GFF4793 are separated by 139 nucleotidesGFF4793 and GFF4794 are separated by 83 nucleotidesGFF4794 and GFF4795 are separated by 37 nucleotidesGFF4795 and GFF4796 overlap by 1 nucleotides GFF4792 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 33,979 to 34,689 GFF4792 GFF4793 - hypothetical protein, at 34,829 to 35,041 GFF4793 GFF4794 - hypothetical protein, at 35,125 to 35,496 GFF4794 GFF4795 - Electron transfer flavoprotein subunit alpha, at 35,534 to 36,478 GFF4795 GFF4796 - Electron transfer flavoprotein subunit beta, at 36,478 to 37,227 GFF4796 Position (kb) 35 36Strain fitness (log2 ratio) -2 -1 0 1 2at 34.134 kb on + strand, within GFF4792at 34.134 kb on + strand, within GFF4792at 34.134 kb on + strand, within GFF4792at 34.134 kb on + strand, within GFF4792at 34.134 kb on + strand, within GFF4792at 34.134 kb on + strand, within GFF4792at 34.134 kb on + strand, within GFF4792at 34.135 kb on - strand, within GFF4792at 34.135 kb on - strand, within GFF4792at 34.135 kb on - strand, within GFF4792at 34.135 kb on - strand, within GFF4792at 34.135 kb on - strand, within GFF4792at 34.135 kb on - strand, within GFF4792at 34.135 kb on - strand, within GFF4792at 34.135 kb on - strand, within GFF4792at 34.200 kb on + strand, within GFF4792at 34.201 kb on - strand, within GFF4792at 34.201 kb on - strand, within GFF4792at 34.220 kb on + strand, within GFF4792at 34.220 kb on + strand, within GFF4792at 34.220 kb on + strand, within GFF4792at 34.221 kb on - strand, within GFF4792at 34.504 kb on + strand, within GFF4792at 34.504 kb on + strand, within GFF4792at 34.504 kb on + strand, within GFF4792at 34.504 kb on + strand, within GFF4792at 34.505 kb on + strand, within GFF4792at 34.505 kb on - strand, within GFF4792at 34.505 kb on - strand, within GFF4792at 34.505 kb on - strand, within GFF4792at 34.505 kb on - strand, within GFF4792at 34.538 kb on + strand, within GFF4792at 34.538 kb on + strand, within GFF4792at 34.539 kb on - strand, within GFF4792at 34.597 kb on + strand, within GFF4792at 34.597 kb on + strand, within GFF4792at 34.597 kb on + strand, within GFF4792at 34.597 kb on + strand, within GFF4792at 34.597 kb on + strand, within GFF4792at 34.597 kb on + strand, within GFF4792at 34.598 kb on - strand, within GFF4792at 34.598 kb on - strand, within GFF4792at 34.598 kb on - strand, within GFF4792at 34.598 kb on - strand, within GFF4792at 34.598 kb on - strand, within GFF4792at 34.675 kb on + strandat 34.675 kb on + strandat 34.676 kb on - strandat 34.685 kb on + strandat 34.685 kb on + strandat 34.686 kb on - strandat 34.703 kb on + strandat 34.703 kb on + strandat 34.704 kb on - strandat 34.704 kb on - strandat 34.889 kb on + strand, within GFF4793at 34.898 kb on + strand, within GFF4793at 34.997 kb on - strand, within GFF4793at 34.997 kb on - strand, within GFF4793at 35.060 kb on - strandat 35.060 kb on - strandat 35.135 kb on + strandat 35.135 kb on + strandat 35.135 kb on + strandat 35.135 kb on + strandat 35.135 kb on + strandat 35.135 kb on + strandat 35.136 kb on - strandat 35.138 kb on + strandat 35.138 kb on + strandat 35.138 kb on + strandat 35.138 kb on + strandat 35.139 kb on - strandat 35.213 kb on + strand, within GFF4794at 35.213 kb on + strand, within GFF4794at 35.214 kb on - strand, within GFF4794at 35.214 kb on - strand, within GFF4794at 35.294 kb on + strand, within GFF4794at 35.294 kb on + strand, within GFF4794at 35.295 kb on - strand, within GFF4794at 35.295 kb on - strand, within GFF4794at 35.295 kb on - strand, within GFF4794at 35.295 kb on - strand, within GFF4794at 35.496 kb on + strandat 35.496 kb on + strandat 35.496 kb on + strandat 35.497 kb on - strandat 35.497 kb on - strandat 35.497 kb on - strandat 35.497 kb on - strandat 35.497 kb on - strandat 35.497 kb on - strandat 35.543 kb on - strandat 35.553 kb on - strandat 35.604 kb on + strandat 35.604 kb on + strandat 35.718 kb on + strand, within GFF4795at 35.718 kb on + strand, within GFF4795at 35.718 kb on + strand, within GFF4795at 35.718 kb on + strand, within GFF4795at 35.718 kb on + strand, within GFF4795at 35.718 kb on + strand, within GFF4795at 35.719 kb on - strand, within GFF4795at 35.719 kb on - strand, within GFF4795at 35.719 kb on - strand, within GFF4795at 35.719 kb on - strand, within GFF4795at 35.719 kb on - strand, within GFF4795at 35.719 kb on - strand, within GFF4795at 35.719 kb on - strand, within GFF4795at 35.719 kb on - strand, within GFF4795at 35.719 kb on - strand, within GFF4795at 35.719 kb on - strand, within GFF4795at 35.721 kb on - strand, within GFF4795at 35.775 kb on + strand, within GFF4795at 35.775 kb on + strand, within GFF4795at 35.776 kb on - strand, within GFF4795at 35.776 kb on - strand, within GFF4795at 36.096 kb on + strand, within GFF4795at 36.096 kb on + strand, within GFF4795at 36.096 kb on + strand, within GFF4795at 36.096 kb on + strand, within GFF4795at 36.096 kb on + strand, within GFF4795at 36.096 kb on + strand, within GFF4795at 36.096 kb on + strand, within GFF4795at 36.096 kb on + strand, within GFF4795at 36.096 kb on + strand, within GFF4795at 36.097 kb on - strand, within GFF4795at 36.097 kb on - strand, within GFF4795at 36.097 kb on - strand, within GFF4795at 36.228 kb on + strand, within GFF4795at 36.229 kb on - strand, within GFF4795at 36.229 kb on - strand, within GFF4795at 36.229 kb on - strand, within GFF4795at 36.229 kb on - strand, within GFF4795at 36.285 kb on + strand, within GFF4795at 36.285 kb on + strand, within GFF4795at 36.285 kb on + strand, within GFF4795at 36.285 kb on + strand, within GFF4795at 36.286 kb on - strand, within GFF4795at 36.286 kb on - strand, within GFF4795at 36.286 kb on - strand, within GFF4795at 36.286 kb on - strand, within GFF4795

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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34,134 + GFF4792 0.22 +0.6
34,134 + GFF4792 0.22 +2.1
34,134 + GFF4792 0.22 -0.6
34,134 + GFF4792 0.22 -0.4
34,134 + GFF4792 0.22 +0.6
34,134 + GFF4792 0.22 +0.1
34,134 + GFF4792 0.22 -0.0
34,135 - GFF4792 0.22 +0.2
34,135 - GFF4792 0.22 -0.3
34,135 - GFF4792 0.22 -1.0
34,135 - GFF4792 0.22 -1.5
34,135 - GFF4792 0.22 -0.1
34,135 - GFF4792 0.22 +0.6
34,135 - GFF4792 0.22 -0.4
34,135 - GFF4792 0.22 -0.6
34,200 + GFF4792 0.31 +0.1
34,201 - GFF4792 0.31 +0.4
34,201 - GFF4792 0.31 -0.1
34,220 + GFF4792 0.34 -0.0
34,220 + GFF4792 0.34 -0.0
34,220 + GFF4792 0.34 -1.1
34,221 - GFF4792 0.34 -0.8
34,504 + GFF4792 0.74 -0.5
34,504 + GFF4792 0.74 +0.2
34,504 + GFF4792 0.74 +0.5
34,504 + GFF4792 0.74 -0.4
34,505 + GFF4792 0.74 -0.5
34,505 - GFF4792 0.74 -1.1
34,505 - GFF4792 0.74 -0.8
34,505 - GFF4792 0.74 +0.5
34,505 - GFF4792 0.74 +0.6
34,538 + GFF4792 0.79 +0.1
34,538 + GFF4792 0.79 -1.5
34,539 - GFF4792 0.79 -0.2
34,597 + GFF4792 0.87 +0.8
34,597 + GFF4792 0.87 -1.3
34,597 + GFF4792 0.87 +1.4
34,597 + GFF4792 0.87 +0.0
34,597 + GFF4792 0.87 +0.2
34,597 + GFF4792 0.87 -0.1
34,598 - GFF4792 0.87 +1.4
34,598 - GFF4792 0.87 -1.2
34,598 - GFF4792 0.87 -0.3
34,598 - GFF4792 0.87 +0.1
34,598 - GFF4792 0.87 -0.2
34,675 + +0.9
34,675 + -0.6
34,676 - +0.7
34,685 + -0.1
34,685 + -0.4
34,686 - +0.6
34,703 + +0.1
34,703 + -0.1
34,704 - -0.4
34,704 - -0.4
34,889 + GFF4793 0.28 -1.0
34,898 + GFF4793 0.32 -0.2
34,997 - GFF4793 0.79 -0.2
34,997 - GFF4793 0.79 -0.2
35,060 - +1.3
35,060 - +0.2
35,135 + +0.6
35,135 + +0.3
35,135 + -0.6
35,135 + -0.6
35,135 + -0.2
35,135 + -0.6
35,136 - +0.4
35,138 + +1.1
35,138 + +1.4
35,138 + +0.1
35,138 + +0.6
35,139 - -0.4
35,213 + GFF4794 0.24 -0.9
35,213 + GFF4794 0.24 +0.1
35,214 - GFF4794 0.24 -0.2
35,214 - GFF4794 0.24 -0.1
35,294 + GFF4794 0.45 -0.7
35,294 + GFF4794 0.45 -1.3
35,295 - GFF4794 0.46 -1.1
35,295 - GFF4794 0.46 -0.1
35,295 - GFF4794 0.46 +1.4
35,295 - GFF4794 0.46 -1.0
35,496 + -0.9
35,496 + -0.9
35,496 + +0.9
35,497 - +0.2
35,497 - +0.7
35,497 - -0.3
35,497 - -0.3
35,497 - -1.0
35,497 - -0.9
35,543 - +0.6
35,553 - +0.8
35,604 + -0.2
35,604 + +0.6
35,718 + GFF4795 0.19 +0.4
35,718 + GFF4795 0.19 -0.4
35,718 + GFF4795 0.19 -0.4
35,718 + GFF4795 0.19 +0.5
35,718 + GFF4795 0.19 -0.9
35,718 + GFF4795 0.19 +0.9
35,719 - GFF4795 0.20 -0.3
35,719 - GFF4795 0.20 -0.1
35,719 - GFF4795 0.20 +1.1
35,719 - GFF4795 0.20 +0.1
35,719 - GFF4795 0.20 +1.1
35,719 - GFF4795 0.20 -0.3
35,719 - GFF4795 0.20 +0.6
35,719 - GFF4795 0.20 +1.4
35,719 - GFF4795 0.20 +1.4
35,719 - GFF4795 0.20 +0.8
35,721 - GFF4795 0.20 +0.3
35,775 + GFF4795 0.26 -0.5
35,775 + GFF4795 0.26 -2.0
35,776 - GFF4795 0.26 +0.3
35,776 - GFF4795 0.26 -1.6
36,096 + GFF4795 0.59 +0.8
36,096 + GFF4795 0.59 +0.3
36,096 + GFF4795 0.59 -1.0
36,096 + GFF4795 0.59 -0.8
36,096 + GFF4795 0.59 -0.6
36,096 + GFF4795 0.59 -0.6
36,096 + GFF4795 0.59 -0.5
36,096 + GFF4795 0.59 -0.4
36,096 + GFF4795 0.59 +0.2
36,097 - GFF4795 0.60 +0.7
36,097 - GFF4795 0.60 +1.1
36,097 - GFF4795 0.60 +0.0
36,228 + GFF4795 0.73 -0.2
36,229 - GFF4795 0.74 +0.3
36,229 - GFF4795 0.74 +1.4
36,229 - GFF4795 0.74 +0.1
36,229 - GFF4795 0.74 +1.4
36,285 + GFF4795 0.79 -0.4
36,285 + GFF4795 0.79 +0.1
36,285 + GFF4795 0.79 -1.0
36,285 + GFF4795 0.79 -1.0
36,286 - GFF4795 0.80 -0.0
36,286 - GFF4795 0.80 -0.5
36,286 - GFF4795 0.80 +0.9
36,286 - GFF4795 0.80 +1.1

Or see this region's nucleotide sequence