Strain Fitness in Xanthobacter sp. DMC5 around GFF4763

Experiment: D,L-Lactate and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4763 and GFF4764 are separated by 230 nucleotides GFF4763 - hypothetical protein, at 254 to 1,093 GFF4763 GFF4764 - hypothetical protein, at 1,324 to 2,331 GFF4764 Position (kb) 0 1 2Strain fitness (log2 ratio) -2 -1 0 1 2at 0.058 kb on + strandat 0.058 kb on + strandat 0.183 kb on + strandat 0.184 kb on - strandat 0.184 kb on - strandat 0.222 kb on + strandat 0.222 kb on + strandat 0.222 kb on + strandat 0.222 kb on + strandat 0.222 kb on + strandat 0.222 kb on + strandat 0.222 kb on + strandat 0.223 kb on - strandat 0.223 kb on - strandat 0.223 kb on - strandat 0.223 kb on - strandat 0.255 kb on + strandat 0.255 kb on + strandat 0.256 kb on - strandat 0.343 kb on - strand, within GFF4763at 0.499 kb on - strand, within GFF4763at 0.574 kb on - strand, within GFF4763at 0.682 kb on + strand, within GFF4763at 0.713 kb on + strand, within GFF4763at 0.721 kb on + strand, within GFF4763at 0.722 kb on - strand, within GFF4763at 0.723 kb on + strand, within GFF4763at 0.724 kb on - strand, within GFF4763at 0.873 kb on + strand, within GFF4763at 0.874 kb on - strand, within GFF4763at 0.874 kb on - strand, within GFF4763at 0.874 kb on - strand, within GFF4763at 0.904 kb on - strand, within GFF4763at 0.904 kb on - strand, within GFF4763at 0.954 kb on + strand, within GFF4763at 0.955 kb on - strand, within GFF4763at 0.955 kb on - strand, within GFF4763at 0.958 kb on + strand, within GFF4763at 0.958 kb on + strand, within GFF4763at 0.958 kb on + strand, within GFF4763at 0.958 kb on + strand, within GFF4763at 0.958 kb on + strand, within GFF4763at 1.180 kb on + strandat 1.283 kb on - strandat 1.430 kb on + strand, within GFF4764at 1.431 kb on - strand, within GFF4764at 1.514 kb on + strand, within GFF4764at 1.569 kb on - strand, within GFF4764at 1.602 kb on + strand, within GFF4764at 1.602 kb on + strand, within GFF4764at 1.602 kb on + strand, within GFF4764at 1.602 kb on + strand, within GFF4764at 1.603 kb on - strand, within GFF4764at 1.603 kb on - strand, within GFF4764at 1.603 kb on - strand, within GFF4764at 1.603 kb on - strand, within GFF4764at 1.689 kb on + strand, within GFF4764at 1.689 kb on + strand, within GFF4764at 1.689 kb on + strand, within GFF4764at 1.690 kb on - strand, within GFF4764at 1.690 kb on - strand, within GFF4764at 1.751 kb on + strand, within GFF4764at 1.752 kb on - strand, within GFF4764at 1.752 kb on - strand, within GFF4764at 1.847 kb on + strand, within GFF4764at 1.880 kb on + strand, within GFF4764at 1.960 kb on + strand, within GFF4764at 1.960 kb on + strand, within GFF4764at 1.960 kb on + strand, within GFF4764at 1.960 kb on + strand, within GFF4764at 1.960 kb on + strand, within GFF4764at 1.961 kb on - strand, within GFF4764at 1.961 kb on - strand, within GFF4764at 2.083 kb on + strand, within GFF4764

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
remove
58 + +0.1
58 + +0.1
183 + -0.1
184 - -0.2
184 - -0.1
222 + +0.1
222 + +0.8
222 + -0.6
222 + -0.6
222 + +1.1
222 + +0.2
222 + -0.5
223 - -1.0
223 - +0.4
223 - -2.3
223 - +0.1
255 + +0.3
255 + -0.4
256 - -0.7
343 - GFF4763 0.11 -0.5
499 - GFF4763 0.29 -0.3
574 - GFF4763 0.38 +1.3
682 + GFF4763 0.51 +0.9
713 + GFF4763 0.55 +0.2
721 + GFF4763 0.56 -0.4
722 - GFF4763 0.56 +0.8
723 + GFF4763 0.56 +0.6
724 - GFF4763 0.56 +0.2
873 + GFF4763 0.74 +0.2
874 - GFF4763 0.74 +1.4
874 - GFF4763 0.74 +1.4
874 - GFF4763 0.74 -0.1
904 - GFF4763 0.77 -0.9
904 - GFF4763 0.77 -0.6
954 + GFF4763 0.83 -0.4
955 - GFF4763 0.83 -0.1
955 - GFF4763 0.83 +0.3
958 + GFF4763 0.84 -0.2
958 + GFF4763 0.84 +0.1
958 + GFF4763 0.84 +0.1
958 + GFF4763 0.84 -0.1
958 + GFF4763 0.84 +2.4
1,180 + +0.4
1,283 - +0.1
1,430 + GFF4764 0.11 +0.4
1,431 - GFF4764 0.11 +0.4
1,514 + GFF4764 0.19 +0.7
1,569 - GFF4764 0.24 +0.1
1,602 + GFF4764 0.28 -0.1
1,602 + GFF4764 0.28 +1.0
1,602 + GFF4764 0.28 +0.5
1,602 + GFF4764 0.28 +2.1
1,603 - GFF4764 0.28 -0.6
1,603 - GFF4764 0.28 -0.4
1,603 - GFF4764 0.28 +0.3
1,603 - GFF4764 0.28 -1.3
1,689 + GFF4764 0.36 -2.1
1,689 + GFF4764 0.36 +0.4
1,689 + GFF4764 0.36 +0.7
1,690 - GFF4764 0.36 +0.3
1,690 - GFF4764 0.36 -1.5
1,751 + GFF4764 0.42 +0.0
1,752 - GFF4764 0.42 -0.7
1,752 - GFF4764 0.42 -0.4
1,847 + GFF4764 0.52 +0.8
1,880 + GFF4764 0.55 +0.0
1,960 + GFF4764 0.63 +1.1
1,960 + GFF4764 0.63 -1.2
1,960 + GFF4764 0.63 -0.1
1,960 + GFF4764 0.63 +1.7
1,960 + GFF4764 0.63 -0.3
1,961 - GFF4764 0.63 -0.5
1,961 - GFF4764 0.63 +0.2
2,083 + GFF4764 0.75 -0.3

Or see this region's nucleotide sequence