Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4742 and GFF4743 are separated by 4 nucleotides GFF4743 and GFF4744 are separated by 12 nucleotides GFF4744 and GFF4745 are separated by 92 nucleotides
GFF4742 - Hexuronate transporter, at 157,398 to 158,669
GFF4742
GFF4743 - hypothetical protein, at 158,674 to 158,871
GFF4743
GFF4744 - Tn3 family transposase TnXax1, at 158,884 to 160,137
GFF4744
GFF4745 - hypothetical protein, at 160,230 to 161,348
GFF4745
Position (kb) 158
159
160
161 Strain fitness (log2 ratio) -2
-1
0
1 at 157.938 kb on + strand, within GFF4742 at 157.938 kb on + strand, within GFF4742 at 157.938 kb on + strand, within GFF4742 at 157.939 kb on - strand, within GFF4742 at 157.939 kb on - strand, within GFF4742 at 157.939 kb on - strand, within GFF4742 at 158.100 kb on + strand, within GFF4742 at 158.124 kb on + strand, within GFF4742 at 158.136 kb on + strand, within GFF4742 at 158.160 kb on + strand, within GFF4742 at 158.160 kb on + strand, within GFF4742 at 158.161 kb on - strand, within GFF4742 at 158.176 kb on - strand, within GFF4742 at 158.176 kb on - strand, within GFF4742 at 158.311 kb on - strand, within GFF4742 at 158.439 kb on + strand, within GFF4742 at 158.440 kb on - strand, within GFF4742 at 158.440 kb on - strand, within GFF4742 at 158.440 kb on - strand, within GFF4742 at 158.799 kb on + strand, within GFF4743 at 158.834 kb on + strand, within GFF4743 at 158.834 kb on + strand, within GFF4743 at 159.153 kb on - strand, within GFF4744 at 159.153 kb on - strand, within GFF4744 at 159.171 kb on - strand, within GFF4744 at 159.171 kb on - strand, within GFF4744 at 159.188 kb on + strand, within GFF4744 at 159.189 kb on - strand, within GFF4744 at 159.189 kb on - strand, within GFF4744 at 159.219 kb on - strand, within GFF4744 at 159.219 kb on - strand, within GFF4744 at 159.219 kb on - strand, within GFF4744 at 159.219 kb on - strand, within GFF4744 at 159.219 kb on - strand, within GFF4744 at 159.377 kb on + strand, within GFF4744 at 159.378 kb on - strand, within GFF4744 at 159.378 kb on - strand, within GFF4744 at 159.506 kb on + strand, within GFF4744 at 159.506 kb on + strand, within GFF4744 at 159.506 kb on + strand, within GFF4744 at 159.507 kb on - strand, within GFF4744 at 159.647 kb on + strand, within GFF4744 at 159.692 kb on + strand, within GFF4744 at 159.692 kb on + strand, within GFF4744 at 159.693 kb on - strand, within GFF4744 at 159.845 kb on + strand, within GFF4744 at 159.845 kb on + strand, within GFF4744 at 159.845 kb on + strand, within GFF4744 at 159.845 kb on + strand, within GFF4744 at 159.846 kb on - strand, within GFF4744 at 159.846 kb on - strand, within GFF4744 at 159.929 kb on + strand, within GFF4744 at 160.126 kb on - strand at 160.164 kb on + strand at 160.252 kb on + strand at 160.253 kb on - strand at 160.322 kb on + strand at 160.322 kb on + strand at 160.323 kb on - strand at 160.324 kb on + strand at 160.324 kb on + strand at 160.576 kb on + strand, within GFF4745 at 160.577 kb on - strand, within GFF4745 at 160.714 kb on + strand, within GFF4745 at 160.715 kb on - strand, within GFF4745 at 160.765 kb on + strand, within GFF4745 at 160.765 kb on + strand, within GFF4745 at 160.766 kb on - strand, within GFF4745
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 157,938 + GFF4742 0.42 -1.1 157,938 + GFF4742 0.42 -0.7 157,938 + GFF4742 0.42 +0.0 157,939 - GFF4742 0.43 +0.4 157,939 - GFF4742 0.43 +0.7 157,939 - GFF4742 0.43 -0.2 158,100 + GFF4742 0.55 +0.7 158,124 + GFF4742 0.57 -2.5 158,136 + GFF4742 0.58 +0.4 158,160 + GFF4742 0.60 -1.1 158,160 + GFF4742 0.60 +1.4 158,161 - GFF4742 0.60 -2.3 158,176 - GFF4742 0.61 -0.5 158,176 - GFF4742 0.61 -0.5 158,311 - GFF4742 0.72 -0.1 158,439 + GFF4742 0.82 +0.3 158,440 - GFF4742 0.82 -1.8 158,440 - GFF4742 0.82 -0.4 158,440 - GFF4742 0.82 +0.3 158,799 + GFF4743 0.63 -0.3 158,834 + GFF4743 0.81 +1.2 158,834 + GFF4743 0.81 +0.8 159,153 - GFF4744 0.21 -0.3 159,153 - GFF4744 0.21 -0.6 159,171 - GFF4744 0.23 +0.1 159,171 - GFF4744 0.23 +0.0 159,188 + GFF4744 0.24 +0.4 159,189 - GFF4744 0.24 -0.6 159,189 - GFF4744 0.24 +0.1 159,219 - GFF4744 0.27 -0.6 159,219 - GFF4744 0.27 -0.5 159,219 - GFF4744 0.27 -0.1 159,219 - GFF4744 0.27 -0.8 159,219 - GFF4744 0.27 -0.6 159,377 + GFF4744 0.39 -1.1 159,378 - GFF4744 0.39 +1.0 159,378 - GFF4744 0.39 +1.5 159,506 + GFF4744 0.50 -0.8 159,506 + GFF4744 0.50 -1.0 159,506 + GFF4744 0.50 -1.6 159,507 - GFF4744 0.50 +0.1 159,647 + GFF4744 0.61 +0.3 159,692 + GFF4744 0.64 +0.1 159,692 + GFF4744 0.64 -0.5 159,693 - GFF4744 0.65 -0.0 159,845 + GFF4744 0.77 -0.2 159,845 + GFF4744 0.77 +0.8 159,845 + GFF4744 0.77 -2.3 159,845 + GFF4744 0.77 +0.4 159,846 - GFF4744 0.77 -1.5 159,846 - GFF4744 0.77 +0.3 159,929 + GFF4744 0.83 +0.7 160,126 - +0.4 160,164 + -0.2 160,252 + -0.0 160,253 - -0.1 160,322 + +0.2 160,322 + -0.9 160,323 - +1.0 160,324 + -1.2 160,324 + -0.4 160,576 + GFF4745 0.31 +0.4 160,577 - GFF4745 0.31 -0.6 160,714 + GFF4745 0.43 -0.6 160,715 - GFF4745 0.43 +1.0 160,765 + GFF4745 0.48 -1.0 160,765 + GFF4745 0.48 -0.5 160,766 - GFF4745 0.48 -0.1
Or see this region's nucleotide sequence