Strain Fitness in Xanthobacter sp. DMC5 around GFF4738

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4736 and GFF4737 are separated by 11 nucleotidesGFF4737 and GFF4738 overlap by 1 nucleotidesGFF4738 and GFF4739 overlap by 4 nucleotides GFF4736 - Respiratory nitrate reductase 1 gamma chain, at 146,575 to 147,348 GFF4736 GFF4737 - Nitrate reductase molybdenum cofactor assembly chaperone NarJ, at 147,360 to 148,082 GFF4737 GFF4738 - Respiratory nitrate reductase 1 beta chain, at 148,082 to 149,617 GFF4738 GFF4739 - Respiratory nitrate reductase 1 alpha chain, at 149,614 to 153,357 GFF4739 Position (kb) 148 149 150Strain fitness (log2 ratio) -2 -1 0 1 2at 147.248 kb on + strand, within GFF4736at 147.248 kb on + strand, within GFF4736at 147.248 kb on + strand, within GFF4736at 147.249 kb on - strand, within GFF4736at 147.249 kb on - strand, within GFF4736at 147.613 kb on + strand, within GFF4737at 147.613 kb on + strand, within GFF4737at 147.889 kb on + strand, within GFF4737at 147.889 kb on + strand, within GFF4737at 147.889 kb on + strand, within GFF4737at 147.889 kb on + strand, within GFF4737at 147.890 kb on - strand, within GFF4737at 147.890 kb on - strand, within GFF4737at 147.890 kb on - strand, within GFF4737at 147.907 kb on + strand, within GFF4737at 148.266 kb on + strand, within GFF4738at 148.290 kb on + strand, within GFF4738at 148.290 kb on + strand, within GFF4738at 148.290 kb on + strand, within GFF4738at 148.290 kb on + strand, within GFF4738at 148.291 kb on - strand, within GFF4738at 148.377 kb on + strand, within GFF4738at 148.377 kb on + strand, within GFF4738at 148.378 kb on - strand, within GFF4738at 148.378 kb on - strand, within GFF4738at 148.378 kb on - strand, within GFF4738at 148.378 kb on - strand, within GFF4738at 148.378 kb on - strand, within GFF4738at 148.378 kb on - strand, within GFF4738at 148.455 kb on + strand, within GFF4738at 148.557 kb on + strand, within GFF4738at 148.557 kb on + strand, within GFF4738at 148.557 kb on + strand, within GFF4738at 148.557 kb on + strand, within GFF4738at 148.557 kb on + strand, within GFF4738at 148.582 kb on - strand, within GFF4738at 148.744 kb on - strand, within GFF4738at 148.797 kb on + strand, within GFF4738at 148.798 kb on - strand, within GFF4738at 148.798 kb on - strand, within GFF4738at 148.815 kb on + strand, within GFF4738at 148.816 kb on - strand, within GFF4738at 148.923 kb on + strand, within GFF4738at 148.924 kb on - strand, within GFF4738at 148.935 kb on + strand, within GFF4738at 148.935 kb on + strand, within GFF4738at 148.935 kb on + strand, within GFF4738at 149.016 kb on + strand, within GFF4738at 149.017 kb on - strand, within GFF4738at 149.017 kb on - strand, within GFF4738at 149.017 kb on - strand, within GFF4738at 149.017 kb on - strand, within GFF4738at 149.085 kb on + strand, within GFF4738at 149.086 kb on - strand, within GFF4738at 149.086 kb on - strand, within GFF4738at 149.086 kb on - strand, within GFF4738at 149.103 kb on + strand, within GFF4738at 149.116 kb on - strand, within GFF4738at 149.316 kb on + strand, within GFF4738at 149.464 kb on - strandat 149.505 kb on + strandat 149.505 kb on + strandat 149.506 kb on - strandat 149.506 kb on - strandat 149.730 kb on - strandat 149.802 kb on - strandat 149.805 kb on + strandat 149.873 kb on + strandat 149.873 kb on + strandat 149.873 kb on + strandat 149.873 kb on + strandat 149.874 kb on - strandat 149.874 kb on - strandat 150.038 kb on + strand, within GFF4739at 150.041 kb on - strand, within GFF4739at 150.054 kb on + strand, within GFF4739at 150.056 kb on + strand, within GFF4739at 150.057 kb on - strand, within GFF4739at 150.057 kb on - strand, within GFF4739at 150.057 kb on - strand, within GFF4739at 150.224 kb on + strand, within GFF4739at 150.224 kb on + strand, within GFF4739at 150.225 kb on - strand, within GFF4739at 150.225 kb on - strand, within GFF4739at 150.281 kb on + strand, within GFF4739at 150.282 kb on - strand, within GFF4739at 150.294 kb on - strand, within GFF4739

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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147,248 + GFF4736 0.87 +0.9
147,248 + GFF4736 0.87 -0.1
147,248 + GFF4736 0.87 -0.3
147,249 - GFF4736 0.87 -0.1
147,249 - GFF4736 0.87 -0.1
147,613 + GFF4737 0.35 +0.1
147,613 + GFF4737 0.35 +0.7
147,889 + GFF4737 0.73 +1.0
147,889 + GFF4737 0.73 +0.9
147,889 + GFF4737 0.73 +1.0
147,889 + GFF4737 0.73 -0.1
147,890 - GFF4737 0.73 -0.5
147,890 - GFF4737 0.73 -0.2
147,890 - GFF4737 0.73 +0.5
147,907 + GFF4737 0.76 +0.6
148,266 + GFF4738 0.12 -0.9
148,290 + GFF4738 0.14 +0.8
148,290 + GFF4738 0.14 +0.3
148,290 + GFF4738 0.14 -0.0
148,290 + GFF4738 0.14 +0.8
148,291 - GFF4738 0.14 +0.4
148,377 + GFF4738 0.19 +0.3
148,377 + GFF4738 0.19 +1.1
148,378 - GFF4738 0.19 +0.4
148,378 - GFF4738 0.19 +0.7
148,378 - GFF4738 0.19 +0.5
148,378 - GFF4738 0.19 +2.2
148,378 - GFF4738 0.19 -2.5
148,378 - GFF4738 0.19 -0.1
148,455 + GFF4738 0.24 -0.1
148,557 + GFF4738 0.31 +1.1
148,557 + GFF4738 0.31 +1.4
148,557 + GFF4738 0.31 -0.6
148,557 + GFF4738 0.31 +1.0
148,557 + GFF4738 0.31 +0.7
148,582 - GFF4738 0.33 +0.1
148,744 - GFF4738 0.43 +0.4
148,797 + GFF4738 0.47 +0.9
148,798 - GFF4738 0.47 +0.5
148,798 - GFF4738 0.47 -0.0
148,815 + GFF4738 0.48 +0.2
148,816 - GFF4738 0.48 -0.3
148,923 + GFF4738 0.55 +0.1
148,924 - GFF4738 0.55 +1.2
148,935 + GFF4738 0.56 +0.4
148,935 + GFF4738 0.56 -0.8
148,935 + GFF4738 0.56 +0.0
149,016 + GFF4738 0.61 +0.5
149,017 - GFF4738 0.61 +1.1
149,017 - GFF4738 0.61 +2.5
149,017 - GFF4738 0.61 +0.1
149,017 - GFF4738 0.61 +0.8
149,085 + GFF4738 0.65 +1.8
149,086 - GFF4738 0.65 -0.1
149,086 - GFF4738 0.65 +0.3
149,086 - GFF4738 0.65 +0.2
149,103 + GFF4738 0.66 +0.4
149,116 - GFF4738 0.67 +0.7
149,316 + GFF4738 0.80 +0.1
149,464 - +0.2
149,505 + +0.9
149,505 + +0.0
149,506 - +0.2
149,506 - +0.2
149,730 - +0.6
149,802 - -1.3
149,805 + -0.6
149,873 + +1.0
149,873 + +1.3
149,873 + -0.1
149,873 + -0.5
149,874 - +1.7
149,874 - +2.1
150,038 + GFF4739 0.11 +0.4
150,041 - GFF4739 0.11 -0.3
150,054 + GFF4739 0.12 +0.3
150,056 + GFF4739 0.12 -1.2
150,057 - GFF4739 0.12 +0.7
150,057 - GFF4739 0.12 +0.2
150,057 - GFF4739 0.12 +1.0
150,224 + GFF4739 0.16 +2.5
150,224 + GFF4739 0.16 +0.5
150,225 - GFF4739 0.16 +0.7
150,225 - GFF4739 0.16 +1.7
150,281 + GFF4739 0.18 +1.5
150,282 - GFF4739 0.18 -0.3
150,294 - GFF4739 0.18 +1.0

Or see this region's nucleotide sequence