Strain Fitness in Xanthobacter sp. DMC5 around GFF472

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF471 and GFF472 are separated by 1 nucleotidesGFF472 and GFF473 are separated by 28 nucleotides GFF471 - hypothetical protein, at 497,312 to 498,247 GFF471 GFF472 - hypothetical protein, at 498,249 to 499,202 GFF472 GFF473 - Leu/Ile/Val-binding protein, at 499,231 to 500,421 GFF473 Position (kb) 498 499 500Strain fitness (log2 ratio) -2 -1 0 1 2at 497.514 kb on + strand, within GFF471at 497.514 kb on + strand, within GFF471at 497.541 kb on + strand, within GFF471at 497.610 kb on + strand, within GFF471at 497.610 kb on + strand, within GFF471at 497.610 kb on + strand, within GFF471at 497.611 kb on - strand, within GFF471at 497.611 kb on - strand, within GFF471at 497.757 kb on + strand, within GFF471at 497.757 kb on + strand, within GFF471at 497.757 kb on + strand, within GFF471at 497.757 kb on + strand, within GFF471at 497.757 kb on + strand, within GFF471at 497.758 kb on - strand, within GFF471at 497.758 kb on - strand, within GFF471at 497.823 kb on + strand, within GFF471at 497.823 kb on + strand, within GFF471at 497.824 kb on - strand, within GFF471at 497.881 kb on - strand, within GFF471at 498.135 kb on + strand, within GFF471at 498.135 kb on + strand, within GFF471at 498.135 kb on + strand, within GFF471at 498.136 kb on - strand, within GFF471at 498.342 kb on + strandat 498.388 kb on + strand, within GFF472at 498.389 kb on - strand, within GFF472at 498.389 kb on - strand, within GFF472at 498.389 kb on - strand, within GFF472at 498.556 kb on + strand, within GFF472at 498.556 kb on + strand, within GFF472at 498.557 kb on - strand, within GFF472at 498.598 kb on + strand, within GFF472at 498.598 kb on + strand, within GFF472at 498.599 kb on - strand, within GFF472at 499.006 kb on + strand, within GFF472at 499.006 kb on + strand, within GFF472at 499.007 kb on - strand, within GFF472at 499.007 kb on - strand, within GFF472at 499.007 kb on - strand, within GFF472at 499.238 kb on + strandat 499.439 kb on + strand, within GFF473at 499.440 kb on - strand, within GFF473at 499.454 kb on + strand, within GFF473at 499.454 kb on + strand, within GFF473at 499.454 kb on + strand, within GFF473at 499.454 kb on + strand, within GFF473at 499.454 kb on + strand, within GFF473at 499.454 kb on + strand, within GFF473at 499.454 kb on + strand, within GFF473at 499.455 kb on - strand, within GFF473at 499.455 kb on - strand, within GFF473at 499.455 kb on - strand, within GFF473at 499.455 kb on - strand, within GFF473at 499.455 kb on - strand, within GFF473at 499.455 kb on - strand, within GFF473at 499.487 kb on + strand, within GFF473at 499.487 kb on + strand, within GFF473at 499.488 kb on - strand, within GFF473at 499.488 kb on - strand, within GFF473at 499.488 kb on - strand, within GFF473at 499.576 kb on + strand, within GFF473at 499.631 kb on + strand, within GFF473at 499.631 kb on + strand, within GFF473at 499.631 kb on + strand, within GFF473at 499.632 kb on - strand, within GFF473at 499.653 kb on + strand, within GFF473at 499.796 kb on + strand, within GFF473at 499.796 kb on + strand, within GFF473at 499.796 kb on + strand, within GFF473at 499.797 kb on - strand, within GFF473at 499.797 kb on - strand, within GFF473at 499.913 kb on + strand, within GFF473at 499.913 kb on + strand, within GFF473at 499.913 kb on + strand, within GFF473at 499.914 kb on - strand, within GFF473at 499.967 kb on + strand, within GFF473at 499.967 kb on + strand, within GFF473at 499.967 kb on + strand, within GFF473at 499.967 kb on + strand, within GFF473at 499.967 kb on + strand, within GFF473at 499.968 kb on - strand, within GFF473at 499.968 kb on - strand, within GFF473at 499.968 kb on - strand, within GFF473at 500.168 kb on + strand, within GFF473at 500.168 kb on + strand, within GFF473at 500.169 kb on - strand, within GFF473at 500.171 kb on + strand, within GFF473at 500.171 kb on + strand, within GFF473at 500.171 kb on + strand, within GFF473at 500.172 kb on - strand, within GFF473at 500.172 kb on - strand, within GFF473

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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497,514 + GFF471 0.22 +0.3
497,514 + GFF471 0.22 -0.3
497,541 + GFF471 0.24 -0.2
497,610 + GFF471 0.32 -1.7
497,610 + GFF471 0.32 +0.8
497,610 + GFF471 0.32 -0.2
497,611 - GFF471 0.32 -0.3
497,611 - GFF471 0.32 -0.4
497,757 + GFF471 0.48 -0.0
497,757 + GFF471 0.48 -0.5
497,757 + GFF471 0.48 +0.1
497,757 + GFF471 0.48 +0.6
497,757 + GFF471 0.48 +2.7
497,758 - GFF471 0.48 -0.9
497,758 - GFF471 0.48 +0.2
497,823 + GFF471 0.55 -0.7
497,823 + GFF471 0.55 -1.4
497,824 - GFF471 0.55 -0.9
497,881 - GFF471 0.61 -0.4
498,135 + GFF471 0.88 +2.7
498,135 + GFF471 0.88 -0.4
498,135 + GFF471 0.88 +0.4
498,136 - GFF471 0.88 -0.7
498,342 + +0.0
498,388 + GFF472 0.15 +0.1
498,389 - GFF472 0.15 -0.4
498,389 - GFF472 0.15 -0.9
498,389 - GFF472 0.15 -1.0
498,556 + GFF472 0.32 -0.7
498,556 + GFF472 0.32 +0.7
498,557 - GFF472 0.32 -1.1
498,598 + GFF472 0.37 -0.0
498,598 + GFF472 0.37 -0.7
498,599 - GFF472 0.37 -0.4
499,006 + GFF472 0.79 -0.1
499,006 + GFF472 0.79 +0.5
499,007 - GFF472 0.79 +0.7
499,007 - GFF472 0.79 -1.2
499,007 - GFF472 0.79 +0.2
499,238 + -0.3
499,439 + GFF473 0.17 -0.1
499,440 - GFF473 0.18 +0.0
499,454 + GFF473 0.19 +0.1
499,454 + GFF473 0.19 -0.9
499,454 + GFF473 0.19 -0.2
499,454 + GFF473 0.19 -1.3
499,454 + GFF473 0.19 -0.4
499,454 + GFF473 0.19 +0.1
499,454 + GFF473 0.19 +0.3
499,455 - GFF473 0.19 -0.3
499,455 - GFF473 0.19 -2.2
499,455 - GFF473 0.19 -0.7
499,455 - GFF473 0.19 -0.9
499,455 - GFF473 0.19 +2.1
499,455 - GFF473 0.19 +0.5
499,487 + GFF473 0.21 +0.7
499,487 + GFF473 0.21 -1.3
499,488 - GFF473 0.22 +0.6
499,488 - GFF473 0.22 -1.1
499,488 - GFF473 0.22 -0.9
499,576 + GFF473 0.29 -0.3
499,631 + GFF473 0.34 -0.6
499,631 + GFF473 0.34 -0.2
499,631 + GFF473 0.34 -2.0
499,632 - GFF473 0.34 +0.1
499,653 + GFF473 0.35 +0.3
499,796 + GFF473 0.47 -0.8
499,796 + GFF473 0.47 -0.7
499,796 + GFF473 0.47 -1.0
499,797 - GFF473 0.48 -2.4
499,797 - GFF473 0.48 -0.4
499,913 + GFF473 0.57 -0.2
499,913 + GFF473 0.57 -1.2
499,913 + GFF473 0.57 -0.7
499,914 - GFF473 0.57 -0.1
499,967 + GFF473 0.62 -0.3
499,967 + GFF473 0.62 -0.1
499,967 + GFF473 0.62 -0.2
499,967 + GFF473 0.62 +1.7
499,967 + GFF473 0.62 -0.0
499,968 - GFF473 0.62 -0.9
499,968 - GFF473 0.62 -0.9
499,968 - GFF473 0.62 -0.4
500,168 + GFF473 0.79 -0.3
500,168 + GFF473 0.79 +1.3
500,169 - GFF473 0.79 -0.2
500,171 + GFF473 0.79 -0.1
500,171 + GFF473 0.79 +0.2
500,171 + GFF473 0.79 +0.1
500,172 - GFF473 0.79 +0.6
500,172 - GFF473 0.79 +0.2

Or see this region's nucleotide sequence