Strain Fitness in Xanthobacter sp. DMC5 around GFF4647

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4645 and GFF4646 overlap by 4 nucleotidesGFF4646 and GFF4647 are separated by 74 nucleotidesGFF4647 and GFF4648 are separated by 28 nucleotidesGFF4648 and GFF4649 are separated by 82 nucleotides GFF4645 - dTTP/UTP pyrophosphatase, at 55,257 to 55,877 GFF4645 GFF4646 - DNA gyrase inhibitor YacG, at 55,874 to 56,080 GFF4646 GFF4647 - hypothetical protein, at 56,155 to 57,033 GFF4647 GFF4648 - hypothetical protein, at 57,062 to 57,700 GFF4648 GFF4649 - NADP/NAD-dependent aldehyde dehydrogenase PuuC, at 57,783 to 59,264 GFF4649 Position (kb) 56 57 58Strain fitness (log2 ratio) -2 -1 0 1at 55.952 kb on + strand, within GFF4646at 55.952 kb on + strand, within GFF4646at 56.015 kb on + strand, within GFF4646at 56.016 kb on - strand, within GFF4646at 56.016 kb on - strand, within GFF4646at 56.182 kb on + strandat 56.183 kb on - strandat 56.217 kb on + strandat 56.217 kb on + strandat 56.217 kb on + strandat 56.217 kb on + strandat 56.217 kb on + strandat 56.218 kb on - strandat 56.218 kb on - strandat 56.249 kb on + strand, within GFF4647at 56.249 kb on + strand, within GFF4647at 56.249 kb on + strand, within GFF4647at 56.250 kb on - strand, within GFF4647at 56.275 kb on + strand, within GFF4647at 56.275 kb on + strand, within GFF4647at 56.276 kb on - strand, within GFF4647at 56.276 kb on - strand, within GFF4647at 56.342 kb on - strand, within GFF4647at 56.441 kb on + strand, within GFF4647at 56.442 kb on - strand, within GFF4647at 56.442 kb on - strand, within GFF4647at 56.505 kb on + strand, within GFF4647at 56.548 kb on + strand, within GFF4647at 56.549 kb on - strand, within GFF4647at 56.602 kb on + strand, within GFF4647at 56.603 kb on - strand, within GFF4647at 56.668 kb on + strand, within GFF4647at 56.669 kb on - strand, within GFF4647at 56.674 kb on + strand, within GFF4647at 56.702 kb on - strand, within GFF4647at 56.753 kb on + strand, within GFF4647at 56.779 kb on + strand, within GFF4647at 56.939 kb on - strand, within GFF4647at 57.087 kb on + strandat 57.087 kb on + strandat 57.097 kb on + strandat 57.200 kb on + strand, within GFF4648at 57.200 kb on + strand, within GFF4648at 57.201 kb on - strand, within GFF4648at 57.201 kb on - strand, within GFF4648at 57.240 kb on + strand, within GFF4648at 57.240 kb on + strand, within GFF4648at 57.241 kb on - strand, within GFF4648at 57.248 kb on + strand, within GFF4648at 57.249 kb on - strand, within GFF4648at 57.398 kb on + strand, within GFF4648at 57.423 kb on - strand, within GFF4648at 57.423 kb on - strand, within GFF4648at 57.423 kb on - strand, within GFF4648at 57.423 kb on - strand, within GFF4648at 57.674 kb on + strandat 57.674 kb on + strandat 57.674 kb on + strandat 57.675 kb on - strandat 57.675 kb on - strandat 57.675 kb on - strandat 57.675 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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55,952 + GFF4646 0.38 -1.3
55,952 + GFF4646 0.38 +0.7
56,015 + GFF4646 0.68 -0.1
56,016 - GFF4646 0.69 -0.6
56,016 - GFF4646 0.69 +0.9
56,182 + +0.6
56,183 - -0.9
56,217 + -0.3
56,217 + +0.2
56,217 + +0.2
56,217 + -1.5
56,217 + -0.6
56,218 - -0.1
56,218 - -0.6
56,249 + GFF4647 0.11 -0.2
56,249 + GFF4647 0.11 +0.2
56,249 + GFF4647 0.11 +0.7
56,250 - GFF4647 0.11 +0.8
56,275 + GFF4647 0.14 -0.5
56,275 + GFF4647 0.14 -1.9
56,276 - GFF4647 0.14 +0.4
56,276 - GFF4647 0.14 -0.3
56,342 - GFF4647 0.21 -0.0
56,441 + GFF4647 0.33 -0.1
56,442 - GFF4647 0.33 -0.9
56,442 - GFF4647 0.33 +0.7
56,505 + GFF4647 0.40 +0.8
56,548 + GFF4647 0.45 -0.2
56,549 - GFF4647 0.45 +0.7
56,602 + GFF4647 0.51 -0.2
56,603 - GFF4647 0.51 -0.4
56,668 + GFF4647 0.58 +1.3
56,669 - GFF4647 0.58 -0.3
56,674 + GFF4647 0.59 +0.7
56,702 - GFF4647 0.62 -0.8
56,753 + GFF4647 0.68 -0.4
56,779 + GFF4647 0.71 -0.9
56,939 - GFF4647 0.89 -0.3
57,087 + -0.6
57,087 + +0.5
57,097 + -0.1
57,200 + GFF4648 0.22 -0.1
57,200 + GFF4648 0.22 +0.7
57,201 - GFF4648 0.22 -0.4
57,201 - GFF4648 0.22 -2.2
57,240 + GFF4648 0.28 -0.3
57,240 + GFF4648 0.28 +0.1
57,241 - GFF4648 0.28 +0.6
57,248 + GFF4648 0.29 -0.0
57,249 - GFF4648 0.29 +1.4
57,398 + GFF4648 0.53 +0.2
57,423 - GFF4648 0.56 -0.3
57,423 - GFF4648 0.56 -0.6
57,423 - GFF4648 0.56 +0.0
57,423 - GFF4648 0.56 +0.2
57,674 + +0.2
57,674 + -0.3
57,674 + -0.2
57,675 - -0.4
57,675 - -0.8
57,675 - +0.2
57,675 - +0.3

Or see this region's nucleotide sequence