Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4635 and GFF4636 are separated by 203 nucleotides GFF4636 and GFF4637 are separated by 98 nucleotides GFF4637 and GFF4638 are separated by 148 nucleotides GFF4638 and GFF4639 are separated by 110 nucleotides
GFF4635 - dCTP deaminase, dUMP-forming, at 44,640 to 45,767
GFF4635
GFF4636 - hypothetical protein, at 45,971 to 46,357
GFF4636
GFF4637 - hypothetical protein, at 46,456 to 48,687
GFF4637
GFF4638 - Disulfide-bond oxidoreductase YfcG, at 48,836 to 49,480
GFF4638
GFF4639 - Cell division protein ZapE, at 49,591 to 50,778
GFF4639
Position (kb) 46
47
48
49 Strain fitness (log2 ratio) -2
-1
0
1
2 at 45.787 kb on - strand at 45.787 kb on - strand at 45.962 kb on + strand at 46.042 kb on + strand, within GFF4636 at 46.043 kb on - strand, within GFF4636 at 46.043 kb on - strand, within GFF4636 at 46.063 kb on + strand, within GFF4636 at 46.312 kb on + strand, within GFF4636 at 46.313 kb on - strand, within GFF4636 at 46.425 kb on + strand at 46.425 kb on + strand at 46.426 kb on - strand at 46.426 kb on - strand at 46.580 kb on + strand at 46.581 kb on - strand at 46.581 kb on - strand at 46.820 kb on + strand, within GFF4637 at 46.820 kb on + strand, within GFF4637 at 46.821 kb on - strand, within GFF4637 at 47.032 kb on + strand, within GFF4637 at 47.033 kb on - strand, within GFF4637 at 47.048 kb on + strand, within GFF4637 at 47.202 kb on - strand, within GFF4637 at 47.351 kb on + strand, within GFF4637 at 47.894 kb on + strand, within GFF4637 at 48.059 kb on + strand, within GFF4637 at 48.059 kb on + strand, within GFF4637 at 48.060 kb on - strand, within GFF4637 at 48.060 kb on - strand, within GFF4637 at 48.536 kb on + strand at 48.537 kb on - strand at 48.537 kb on - strand at 48.855 kb on - strand at 48.855 kb on - strand at 48.881 kb on + strand at 48.941 kb on + strand, within GFF4638 at 48.941 kb on + strand, within GFF4638 at 48.971 kb on + strand, within GFF4638 at 48.972 kb on - strand, within GFF4638 at 48.972 kb on - strand, within GFF4638 at 49.157 kb on + strand, within GFF4638 at 49.157 kb on + strand, within GFF4638 at 49.158 kb on - strand, within GFF4638 at 49.247 kb on + strand, within GFF4638 at 49.331 kb on + strand, within GFF4638 at 49.337 kb on + strand, within GFF4638 at 49.337 kb on + strand, within GFF4638 at 49.337 kb on + strand, within GFF4638 at 49.337 kb on + strand, within GFF4638 at 49.337 kb on + strand, within GFF4638 at 49.337 kb on + strand, within GFF4638 at 49.338 kb on - strand, within GFF4638 at 49.338 kb on - strand, within GFF4638 at 49.338 kb on - strand, within GFF4638 at 49.338 kb on - strand, within GFF4638 at 49.338 kb on - strand, within GFF4638 at 49.340 kb on + strand, within GFF4638 at 49.434 kb on - strand at 49.506 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 45,787 - +0.3 45,787 - +1.1 45,962 + -0.6 46,042 + GFF4636 0.18 -0.1 46,043 - GFF4636 0.19 +0.8 46,043 - GFF4636 0.19 -0.1 46,063 + GFF4636 0.24 +0.8 46,312 + GFF4636 0.88 -1.8 46,313 - GFF4636 0.88 +0.1 46,425 + +0.7 46,425 + -0.8 46,426 - -0.2 46,426 - -0.9 46,580 + +0.0 46,581 - +0.6 46,581 - +0.5 46,820 + GFF4637 0.16 -1.5 46,820 + GFF4637 0.16 -0.4 46,821 - GFF4637 0.16 -1.0 47,032 + GFF4637 0.26 -0.3 47,033 - GFF4637 0.26 -1.2 47,048 + GFF4637 0.27 +0.0 47,202 - GFF4637 0.33 -1.3 47,351 + GFF4637 0.40 -0.4 47,894 + GFF4637 0.64 -0.9 48,059 + GFF4637 0.72 +0.9 48,059 + GFF4637 0.72 +0.8 48,060 - GFF4637 0.72 -0.5 48,060 - GFF4637 0.72 +0.4 48,536 + -0.2 48,537 - -0.2 48,537 - +1.0 48,855 - -0.8 48,855 - +0.3 48,881 + -0.3 48,941 + GFF4638 0.16 -0.5 48,941 + GFF4638 0.16 +0.2 48,971 + GFF4638 0.21 +0.7 48,972 - GFF4638 0.21 -0.2 48,972 - GFF4638 0.21 -0.5 49,157 + GFF4638 0.50 +0.3 49,157 + GFF4638 0.50 +1.2 49,158 - GFF4638 0.50 +0.9 49,247 + GFF4638 0.64 +0.9 49,331 + GFF4638 0.77 +1.2 49,337 + GFF4638 0.78 -0.0 49,337 + GFF4638 0.78 -0.3 49,337 + GFF4638 0.78 +1.7 49,337 + GFF4638 0.78 -0.4 49,337 + GFF4638 0.78 -0.3 49,337 + GFF4638 0.78 -0.1 49,338 - GFF4638 0.78 -0.9 49,338 - GFF4638 0.78 +0.7 49,338 - GFF4638 0.78 +0.2 49,338 - GFF4638 0.78 -1.8 49,338 - GFF4638 0.78 -0.1 49,340 + GFF4638 0.78 -2.0 49,434 - -0.7 49,506 + +1.8
Or see this region's nucleotide sequence