Strain Fitness in Xanthobacter sp. DMC5 around GFF4614

Experiment: D,L-Lactate and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4612 and GFF4613 are separated by 92 nucleotidesGFF4613 and GFF4614 are separated by 204 nucleotidesGFF4614 and GFF4615 are separated by 12 nucleotides GFF4612 - Futalosine hydrolase, at 21,406 to 22,068 GFF4612 GFF4613 - hypothetical protein, at 22,161 to 22,520 GFF4613 GFF4614 - hypothetical protein, at 22,725 to 23,234 GFF4614 GFF4615 - hypothetical protein, at 23,247 to 24,950 GFF4615 Position (kb) 22 23 24Strain fitness (log2 ratio) -1 0 1at 21.798 kb on - strand, within GFF4612at 21.946 kb on + strand, within GFF4612at 21.992 kb on + strand, within GFF4612at 21.993 kb on - strand, within GFF4612at 22.388 kb on - strand, within GFF4613at 22.553 kb on - strandat 22.553 kb on - strandat 22.897 kb on + strand, within GFF4614at 22.911 kb on - strand, within GFF4614at 23.112 kb on + strand, within GFF4614at 23.113 kb on - strand, within GFF4614at 23.314 kb on + strandat 23.338 kb on + strandat 23.339 kb on - strandat 23.594 kb on - strand, within GFF4615at 23.923 kb on + strand, within GFF4615at 23.956 kb on + strand, within GFF4615at 23.956 kb on + strand, within GFF4615at 24.146 kb on + strand, within GFF4615

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
remove
21,798 - GFF4612 0.59 -1.0
21,946 + GFF4612 0.81 -0.0
21,992 + GFF4612 0.88 -0.8
21,993 - GFF4612 0.89 +0.2
22,388 - GFF4613 0.63 +0.0
22,553 - -0.3
22,553 - +0.5
22,897 + GFF4614 0.34 -0.6
22,911 - GFF4614 0.36 -1.0
23,112 + GFF4614 0.76 -1.1
23,113 - GFF4614 0.76 -0.6
23,314 + +0.4
23,338 + +0.2
23,339 - -0.3
23,594 - GFF4615 0.20 -0.6
23,923 + GFF4615 0.40 +1.2
23,956 + GFF4615 0.42 -0.2
23,956 + GFF4615 0.42 -0.5
24,146 + GFF4615 0.53 +0.5

Or see this region's nucleotide sequence