Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4605 and GFF4606 are separated by 56 nucleotides GFF4606 and GFF4607 overlap by 4 nucleotides
GFF4605 - hypothetical protein, at 13,101 to 14,096
GFF4605
GFF4606 - Benzaldehyde dehydrogenase YfmT, at 14,153 to 15,628
GFF4606
GFF4607 - putative GMC-type oxidoreductase, at 15,625 to 17,238
GFF4607
Position (kb) 14
15
16 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 13.255 kb on + strand, within GFF4605 at 13.256 kb on - strand, within GFF4605 at 13.351 kb on + strand, within GFF4605 at 13.352 kb on - strand, within GFF4605 at 13.475 kb on - strand, within GFF4605 at 13.520 kb on - strand, within GFF4605 at 13.520 kb on - strand, within GFF4605 at 13.520 kb on - strand, within GFF4605 at 13.528 kb on + strand, within GFF4605 at 13.528 kb on + strand, within GFF4605 at 13.528 kb on + strand, within GFF4605 at 13.529 kb on - strand, within GFF4605 at 13.529 kb on - strand, within GFF4605 at 13.529 kb on - strand, within GFF4605 at 13.529 kb on - strand, within GFF4605 at 13.639 kb on + strand, within GFF4605 at 13.640 kb on - strand, within GFF4605 at 13.676 kb on - strand, within GFF4605 at 13.684 kb on + strand, within GFF4605 at 13.921 kb on + strand, within GFF4605 at 13.921 kb on + strand, within GFF4605 at 13.922 kb on - strand, within GFF4605 at 13.922 kb on - strand, within GFF4605 at 13.948 kb on - strand, within GFF4605 at 13.948 kb on - strand, within GFF4605 at 13.948 kb on - strand, within GFF4605 at 13.948 kb on - strand, within GFF4605 at 14.051 kb on + strand at 14.052 kb on - strand at 14.392 kb on - strand, within GFF4606 at 14.392 kb on - strand, within GFF4606 at 14.478 kb on + strand, within GFF4606 at 14.478 kb on + strand, within GFF4606 at 14.479 kb on - strand, within GFF4606 at 14.664 kb on - strand, within GFF4606 at 14.774 kb on + strand, within GFF4606 at 14.803 kb on - strand, within GFF4606 at 15.286 kb on - strand, within GFF4606 at 15.286 kb on - strand, within GFF4606 at 15.286 kb on - strand, within GFF4606 at 15.585 kb on + strand at 15.586 kb on - strand at 15.612 kb on + strand at 15.612 kb on + strand at 15.612 kb on + strand at 15.870 kb on - strand, within GFF4607 at 16.160 kb on + strand, within GFF4607 at 16.161 kb on - strand, within GFF4607 at 16.299 kb on - strand, within GFF4607 at 16.607 kb on + strand, within GFF4607 at 16.607 kb on + strand, within GFF4607 at 16.608 kb on - strand, within GFF4607 at 16.608 kb on - strand, within GFF4607 at 16.608 kb on - strand, within GFF4607 at 16.608 kb on - strand, within GFF4607
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 13,255 + GFF4605 0.15 -0.5 13,256 - GFF4605 0.16 +0.9 13,351 + GFF4605 0.25 +0.2 13,352 - GFF4605 0.25 -0.9 13,475 - GFF4605 0.38 -0.5 13,520 - GFF4605 0.42 -0.6 13,520 - GFF4605 0.42 -0.0 13,520 - GFF4605 0.42 +0.7 13,528 + GFF4605 0.43 -1.4 13,528 + GFF4605 0.43 -0.3 13,528 + GFF4605 0.43 -0.8 13,529 - GFF4605 0.43 +0.4 13,529 - GFF4605 0.43 +0.5 13,529 - GFF4605 0.43 -0.6 13,529 - GFF4605 0.43 -1.3 13,639 + GFF4605 0.54 +1.0 13,640 - GFF4605 0.54 +0.0 13,676 - GFF4605 0.58 +0.0 13,684 + GFF4605 0.59 -0.2 13,921 + GFF4605 0.82 -0.0 13,921 + GFF4605 0.82 +0.3 13,922 - GFF4605 0.82 +1.5 13,922 - GFF4605 0.82 +0.8 13,948 - GFF4605 0.85 +1.1 13,948 - GFF4605 0.85 -0.3 13,948 - GFF4605 0.85 -2.8 13,948 - GFF4605 0.85 +0.3 14,051 + +0.5 14,052 - +1.1 14,392 - GFF4606 0.16 +1.7 14,392 - GFF4606 0.16 +0.1 14,478 + GFF4606 0.22 -0.1 14,478 + GFF4606 0.22 -0.5 14,479 - GFF4606 0.22 +0.1 14,664 - GFF4606 0.35 +0.1 14,774 + GFF4606 0.42 -0.9 14,803 - GFF4606 0.44 -0.6 15,286 - GFF4606 0.77 -0.9 15,286 - GFF4606 0.77 +0.7 15,286 - GFF4606 0.77 +0.4 15,585 + +0.5 15,586 - -0.8 15,612 + -0.3 15,612 + -0.3 15,612 + -0.2 15,870 - GFF4607 0.15 -1.3 16,160 + GFF4607 0.33 +0.2 16,161 - GFF4607 0.33 +0.5 16,299 - GFF4607 0.42 -0.3 16,607 + GFF4607 0.61 -0.3 16,607 + GFF4607 0.61 -0.4 16,608 - GFF4607 0.61 -0.5 16,608 - GFF4607 0.61 -0.2 16,608 - GFF4607 0.61 +0.3 16,608 - GFF4607 0.61 +0.4
Or see this region's nucleotide sequence