Strain Fitness in Xanthobacter sp. DMC5 around GFF4601

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4600 and GFF4601 are separated by 218 nucleotidesGFF4601 and GFF4602 overlap by 4 nucleotidesGFF4602 and GFF4603 are separated by 233 nucleotides GFF4600 - HTH-type transcriptional regulator GltC, at 8,969 to 9,883 GFF4600 GFF4601 - hypothetical protein, at 10,102 to 10,785 GFF4601 GFF4602 - hypothetical protein, at 10,782 to 11,144 GFF4602 GFF4603 - Bicarbonate transport ATP-binding protein CmpD, at 11,378 to 12,205 GFF4603 Position (kb) 10 11Strain fitness (log2 ratio) -1 0 1at 9.170 kb on + strand, within GFF4600at 9.171 kb on - strand, within GFF4600at 9.171 kb on - strand, within GFF4600at 9.171 kb on - strand, within GFF4600at 9.171 kb on - strand, within GFF4600at 9.171 kb on - strand, within GFF4600at 9.386 kb on + strand, within GFF4600at 9.386 kb on + strand, within GFF4600at 9.387 kb on - strand, within GFF4600at 9.387 kb on - strand, within GFF4600at 9.513 kb on + strand, within GFF4600at 9.513 kb on + strand, within GFF4600at 9.514 kb on - strand, within GFF4600at 9.514 kb on - strand, within GFF4600at 9.902 kb on - strandat 10.213 kb on - strand, within GFF4601at 10.213 kb on - strand, within GFF4601at 10.251 kb on + strand, within GFF4601at 10.361 kb on + strand, within GFF4601at 10.362 kb on - strand, within GFF4601at 10.362 kb on - strand, within GFF4601at 10.362 kb on - strand, within GFF4601at 10.368 kb on - strand, within GFF4601at 10.657 kb on + strand, within GFF4601at 10.657 kb on + strand, within GFF4601at 10.657 kb on + strand, within GFF4601at 10.658 kb on - strand, within GFF4601at 10.658 kb on - strand, within GFF4601at 10.658 kb on - strand, within GFF4601at 10.658 kb on - strand, within GFF4601at 10.840 kb on - strand, within GFF4602at 10.840 kb on - strand, within GFF4602at 10.840 kb on - strand, within GFF4602at 10.852 kb on + strand, within GFF4602at 10.852 kb on + strand, within GFF4602at 10.852 kb on + strand, within GFF4602at 10.852 kb on + strand, within GFF4602at 10.853 kb on - strand, within GFF4602at 10.853 kb on - strand, within GFF4602at 10.853 kb on - strand, within GFF4602at 10.853 kb on - strand, within GFF4602at 11.036 kb on + strand, within GFF4602at 11.036 kb on + strand, within GFF4602at 11.123 kb on - strandat 11.231 kb on + strandat 11.409 kb on - strandat 11.553 kb on + strand, within GFF4603at 11.553 kb on + strand, within GFF4603at 11.553 kb on + strand, within GFF4603at 11.553 kb on + strand, within GFF4603at 11.553 kb on + strand, within GFF4603at 11.554 kb on - strand, within GFF4603at 11.585 kb on + strand, within GFF4603at 11.585 kb on + strand, within GFF4603at 11.586 kb on - strand, within GFF4603at 11.586 kb on - strand, within GFF4603

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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9,170 + GFF4600 0.22 +0.1
9,171 - GFF4600 0.22 -1.5
9,171 - GFF4600 0.22 +0.0
9,171 - GFF4600 0.22 +0.2
9,171 - GFF4600 0.22 +1.4
9,171 - GFF4600 0.22 -1.1
9,386 + GFF4600 0.46 -0.6
9,386 + GFF4600 0.46 +0.7
9,387 - GFF4600 0.46 +0.4
9,387 - GFF4600 0.46 -0.8
9,513 + GFF4600 0.59 -1.2
9,513 + GFF4600 0.59 +0.8
9,514 - GFF4600 0.60 -0.2
9,514 - GFF4600 0.60 +0.2
9,902 - -0.1
10,213 - GFF4601 0.16 -0.9
10,213 - GFF4601 0.16 +1.2
10,251 + GFF4601 0.22 -0.6
10,361 + GFF4601 0.38 -1.1
10,362 - GFF4601 0.38 -0.2
10,362 - GFF4601 0.38 -1.3
10,362 - GFF4601 0.38 -0.4
10,368 - GFF4601 0.39 +0.8
10,657 + GFF4601 0.81 -1.0
10,657 + GFF4601 0.81 +0.0
10,657 + GFF4601 0.81 +0.9
10,658 - GFF4601 0.81 -0.3
10,658 - GFF4601 0.81 -1.0
10,658 - GFF4601 0.81 -0.2
10,658 - GFF4601 0.81 +0.2
10,840 - GFF4602 0.16 -0.8
10,840 - GFF4602 0.16 +0.3
10,840 - GFF4602 0.16 +0.6
10,852 + GFF4602 0.19 +0.8
10,852 + GFF4602 0.19 +0.4
10,852 + GFF4602 0.19 -0.3
10,852 + GFF4602 0.19 -0.4
10,853 - GFF4602 0.20 -0.2
10,853 - GFF4602 0.20 +1.1
10,853 - GFF4602 0.20 -0.1
10,853 - GFF4602 0.20 +0.1
11,036 + GFF4602 0.70 -1.1
11,036 + GFF4602 0.70 -0.2
11,123 - +0.4
11,231 + +0.3
11,409 - -0.8
11,553 + GFF4603 0.21 +0.7
11,553 + GFF4603 0.21 +0.6
11,553 + GFF4603 0.21 -0.9
11,553 + GFF4603 0.21 -1.2
11,553 + GFF4603 0.21 -0.2
11,554 - GFF4603 0.21 +0.4
11,585 + GFF4603 0.25 +0.5
11,585 + GFF4603 0.25 -0.5
11,586 - GFF4603 0.25 -1.1
11,586 - GFF4603 0.25 +0.6

Or see this region's nucleotide sequence