Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4563 and GFF4564 are separated by 6 nucleotides GFF4564 and GFF4565 are separated by 0 nucleotides GFF4565 and GFF4566 are separated by 179 nucleotides GFF4566 and GFF4567 overlap by 4 nucleotides
GFF4563 - 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase, at 150,821 to 152,392
GFF4563
GFF4564 - Maleamate amidohydrolase, at 152,399 to 153,016
GFF4564
GFF4565 - hypothetical protein, at 153,017 to 153,217
GFF4565
GFF4566 - Acyl carrier protein, at 153,397 to 153,684
GFF4566
GFF4567 - 3-oxoacyl-[acyl-carrier-protein] synthase 2, at 153,681 to 154,886
GFF4567
Position (kb) 153
154 Strain fitness (log2 ratio) -1
0
1
2 at 152.157 kb on - strand, within GFF4563 at 152.318 kb on - strand at 152.363 kb on + strand at 152.391 kb on - strand at 152.437 kb on - strand at 152.559 kb on + strand, within GFF4564 at 152.560 kb on - strand, within GFF4564 at 152.560 kb on - strand, within GFF4564 at 152.560 kb on - strand, within GFF4564 at 152.683 kb on - strand, within GFF4564 at 152.794 kb on - strand, within GFF4564 at 153.112 kb on - strand, within GFF4565 at 153.384 kb on - strand at 153.581 kb on + strand, within GFF4566 at 153.582 kb on - strand, within GFF4566 at 153.582 kb on - strand, within GFF4566 at 153.964 kb on + strand, within GFF4567 at 153.965 kb on - strand, within GFF4567 at 153.965 kb on - strand, within GFF4567 at 154.029 kb on + strand, within GFF4567 at 154.029 kb on + strand, within GFF4567 at 154.029 kb on + strand, within GFF4567 at 154.030 kb on - strand, within GFF4567 at 154.122 kb on + strand, within GFF4567 at 154.122 kb on + strand, within GFF4567 at 154.123 kb on - strand, within GFF4567 at 154.123 kb on - strand, within GFF4567 at 154.123 kb on - strand, within GFF4567
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 152,157 - GFF4563 0.85 +2.0 152,318 - +1.0 152,363 + +0.9 152,391 - +0.7 152,437 - +0.5 152,559 + GFF4564 0.26 -1.2 152,560 - GFF4564 0.26 +0.1 152,560 - GFF4564 0.26 +0.7 152,560 - GFF4564 0.26 +1.5 152,683 - GFF4564 0.46 +0.0 152,794 - GFF4564 0.64 -0.1 153,112 - GFF4565 0.47 -0.5 153,384 - -0.7 153,581 + GFF4566 0.64 -0.3 153,582 - GFF4566 0.64 +1.0 153,582 - GFF4566 0.64 +0.7 153,964 + GFF4567 0.23 +0.3 153,965 - GFF4567 0.24 +1.0 153,965 - GFF4567 0.24 +0.3 154,029 + GFF4567 0.29 +1.3 154,029 + GFF4567 0.29 +0.1 154,029 + GFF4567 0.29 +0.3 154,030 - GFF4567 0.29 +1.0 154,122 + GFF4567 0.37 +1.5 154,122 + GFF4567 0.37 +1.5 154,123 - GFF4567 0.37 +0.7 154,123 - GFF4567 0.37 +0.0 154,123 - GFF4567 0.37 +0.5
Or see this region's nucleotide sequence