Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF455 and GFF456 are separated by 15 nucleotides GFF456 and GFF457 are separated by 120 nucleotides
GFF455 - Riboflavin transport system permease protein RibX, at 483,708 to 484,592
GFF455
GFF456 - Bicarbonate transport ATP-binding protein CmpD, at 484,608 to 485,477
GFF456
GFF457 - hypothetical protein, at 485,598 to 486,644
GFF457
Position (kb) 484
485
486 Strain fitness (log2 ratio) -2
-1
0
1
2 at 483.823 kb on - strand, within GFF455 at 484.195 kb on + strand, within GFF455 at 484.195 kb on + strand, within GFF455 at 484.196 kb on - strand, within GFF455 at 484.196 kb on - strand, within GFF455 at 484.750 kb on + strand, within GFF456 at 484.751 kb on - strand, within GFF456 at 484.790 kb on - strand, within GFF456 at 485.071 kb on + strand, within GFF456 at 485.072 kb on - strand, within GFF456 at 485.525 kb on + strand at 485.632 kb on + strand at 485.632 kb on + strand at 485.633 kb on - strand at 485.633 kb on - strand at 485.644 kb on + strand at 485.645 kb on - strand at 485.735 kb on + strand, within GFF457 at 485.785 kb on + strand, within GFF457 at 485.785 kb on + strand, within GFF457 at 485.785 kb on + strand, within GFF457 at 485.786 kb on - strand, within GFF457 at 485.786 kb on - strand, within GFF457 at 485.806 kb on + strand, within GFF457 at 485.807 kb on - strand, within GFF457 at 485.807 kb on - strand, within GFF457 at 485.807 kb on - strand, within GFF457 at 485.807 kb on - strand, within GFF457 at 485.810 kb on - strand, within GFF457 at 485.810 kb on - strand, within GFF457 at 485.810 kb on - strand, within GFF457 at 485.938 kb on + strand, within GFF457 at 485.938 kb on + strand, within GFF457 at 485.939 kb on - strand, within GFF457 at 486.169 kb on + strand, within GFF457 at 486.169 kb on + strand, within GFF457 at 486.170 kb on - strand, within GFF457 at 486.260 kb on - strand, within GFF457 at 486.358 kb on + strand, within GFF457 at 486.358 kb on + strand, within GFF457 at 486.358 kb on + strand, within GFF457 at 486.359 kb on - strand, within GFF457 at 486.359 kb on - strand, within GFF457 at 486.359 kb on - strand, within GFF457
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 483,823 - GFF455 0.13 +0.4 484,195 + GFF455 0.55 -0.1 484,195 + GFF455 0.55 -0.2 484,196 - GFF455 0.55 -0.3 484,196 - GFF455 0.55 -1.8 484,750 + GFF456 0.16 -0.0 484,751 - GFF456 0.16 -0.7 484,790 - GFF456 0.21 -1.1 485,071 + GFF456 0.53 +0.1 485,072 - GFF456 0.53 -0.2 485,525 + -0.9 485,632 + -0.4 485,632 + +0.1 485,633 - -0.2 485,633 - -0.7 485,644 + +0.0 485,645 - +0.2 485,735 + GFF457 0.13 +2.1 485,785 + GFF457 0.18 +0.4 485,785 + GFF457 0.18 +0.6 485,785 + GFF457 0.18 +0.9 485,786 - GFF457 0.18 -0.3 485,786 - GFF457 0.18 +0.3 485,806 + GFF457 0.20 -0.9 485,807 - GFF457 0.20 +1.4 485,807 - GFF457 0.20 -0.1 485,807 - GFF457 0.20 -1.1 485,807 - GFF457 0.20 +0.9 485,810 - GFF457 0.20 -0.2 485,810 - GFF457 0.20 -1.3 485,810 - GFF457 0.20 -0.7 485,938 + GFF457 0.32 -0.1 485,938 + GFF457 0.32 -0.2 485,939 - GFF457 0.33 +0.9 486,169 + GFF457 0.55 +1.1 486,169 + GFF457 0.55 +0.1 486,170 - GFF457 0.55 -1.4 486,260 - GFF457 0.63 -0.2 486,358 + GFF457 0.73 -1.3 486,358 + GFF457 0.73 +0.6 486,358 + GFF457 0.73 -0.4 486,359 - GFF457 0.73 +0.9 486,359 - GFF457 0.73 -0.2 486,359 - GFF457 0.73 -0.3
Or see this region's nucleotide sequence