Strain Fitness in Xanthobacter sp. DMC5 around GFF4533

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4532 and GFF4533 are separated by 77 nucleotidesGFF4533 and GFF4534 overlap by 4 nucleotidesGFF4534 and GFF4535 overlap by 4 nucleotides GFF4532 - Monocarboxylate 2-oxoacid-binding periplasmic protein, at 107,588 to 108,676 GFF4532 GFF4533 - Caffeine dehydrogenase subunit alpha, at 108,754 to 111,156 GFF4533 GFF4534 - hypothetical protein, at 111,153 to 111,974 GFF4534 GFF4535 - hypothetical protein, at 111,971 to 113,098 GFF4535 Position (kb) 108 109 110 111 112Strain fitness (log2 ratio) -2 -1 0 1at 107.906 kb on + strand, within GFF4532at 107.906 kb on + strand, within GFF4532at 107.964 kb on - strand, within GFF4532at 107.966 kb on + strand, within GFF4532at 107.967 kb on - strand, within GFF4532at 107.970 kb on - strand, within GFF4532at 108.188 kb on + strand, within GFF4532at 108.188 kb on + strand, within GFF4532at 108.188 kb on + strand, within GFF4532at 108.189 kb on - strand, within GFF4532at 108.189 kb on - strand, within GFF4532at 108.189 kb on - strand, within GFF4532at 108.278 kb on + strand, within GFF4532at 108.284 kb on + strand, within GFF4532at 108.285 kb on - strand, within GFF4532at 108.285 kb on - strand, within GFF4532at 108.422 kb on + strand, within GFF4532at 108.422 kb on + strand, within GFF4532at 108.423 kb on - strand, within GFF4532at 108.423 kb on - strand, within GFF4532at 108.512 kb on + strand, within GFF4532at 108.575 kb on + strandat 108.576 kb on - strandat 109.046 kb on - strand, within GFF4533at 109.117 kb on + strand, within GFF4533at 109.118 kb on - strand, within GFF4533at 109.531 kb on + strand, within GFF4533at 109.532 kb on - strand, within GFF4533at 109.660 kb on + strand, within GFF4533at 109.660 kb on + strand, within GFF4533at 109.660 kb on + strand, within GFF4533at 109.661 kb on - strand, within GFF4533at 109.661 kb on - strand, within GFF4533at 109.661 kb on - strand, within GFF4533at 109.661 kb on - strand, within GFF4533at 109.661 kb on - strand, within GFF4533at 109.661 kb on - strand, within GFF4533at 109.675 kb on + strand, within GFF4533at 109.737 kb on + strand, within GFF4533at 109.804 kb on + strand, within GFF4533at 109.804 kb on + strand, within GFF4533at 109.804 kb on + strand, within GFF4533at 109.804 kb on + strand, within GFF4533at 109.804 kb on + strand, within GFF4533at 109.804 kb on + strand, within GFF4533at 109.804 kb on + strand, within GFF4533at 109.805 kb on - strand, within GFF4533at 109.805 kb on - strand, within GFF4533at 109.820 kb on - strand, within GFF4533at 109.835 kb on - strand, within GFF4533at 109.836 kb on + strand, within GFF4533at 109.999 kb on + strand, within GFF4533at 109.999 kb on + strand, within GFF4533at 110.000 kb on - strand, within GFF4533at 110.000 kb on - strand, within GFF4533at 110.000 kb on - strand, within GFF4533at 110.000 kb on - strand, within GFF4533at 110.000 kb on - strand, within GFF4533at 110.038 kb on + strand, within GFF4533at 110.149 kb on + strand, within GFF4533at 110.149 kb on + strand, within GFF4533at 110.149 kb on + strand, within GFF4533at 110.149 kb on + strand, within GFF4533at 110.215 kb on + strand, within GFF4533at 110.401 kb on + strand, within GFF4533at 110.402 kb on - strand, within GFF4533at 110.402 kb on - strand, within GFF4533at 110.402 kb on - strand, within GFF4533at 110.587 kb on + strand, within GFF4533at 110.588 kb on - strand, within GFF4533at 110.650 kb on + strand, within GFF4533at 110.683 kb on + strand, within GFF4533at 110.746 kb on + strand, within GFF4533at 110.746 kb on + strand, within GFF4533at 110.806 kb on + strand, within GFF4533at 110.806 kb on + strand, within GFF4533at 110.806 kb on + strand, within GFF4533at 110.807 kb on - strand, within GFF4533at 110.899 kb on + strand, within GFF4533at 110.899 kb on + strand, within GFF4533at 110.899 kb on + strand, within GFF4533at 110.900 kb on - strand, within GFF4533at 110.900 kb on - strand, within GFF4533at 110.900 kb on - strand, within GFF4533at 110.900 kb on - strand, within GFF4533at 111.570 kb on - strand, within GFF4534

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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107,906 + GFF4532 0.29 -0.3
107,906 + GFF4532 0.29 -0.0
107,964 - GFF4532 0.35 +0.0
107,966 + GFF4532 0.35 +0.4
107,967 - GFF4532 0.35 +0.3
107,970 - GFF4532 0.35 -1.2
108,188 + GFF4532 0.55 -0.3
108,188 + GFF4532 0.55 +0.0
108,188 + GFF4532 0.55 +0.7
108,189 - GFF4532 0.55 -0.7
108,189 - GFF4532 0.55 +0.0
108,189 - GFF4532 0.55 -0.3
108,278 + GFF4532 0.63 +0.9
108,284 + GFF4532 0.64 +0.5
108,285 - GFF4532 0.64 -0.6
108,285 - GFF4532 0.64 -0.9
108,422 + GFF4532 0.77 +1.2
108,422 + GFF4532 0.77 -1.0
108,423 - GFF4532 0.77 -1.3
108,423 - GFF4532 0.77 +0.2
108,512 + GFF4532 0.85 -0.1
108,575 + +0.4
108,576 - +0.7
109,046 - GFF4533 0.12 +0.3
109,117 + GFF4533 0.15 +0.1
109,118 - GFF4533 0.15 -2.0
109,531 + GFF4533 0.32 -0.1
109,532 - GFF4533 0.32 +0.4
109,660 + GFF4533 0.38 -1.1
109,660 + GFF4533 0.38 +1.1
109,660 + GFF4533 0.38 +0.4
109,661 - GFF4533 0.38 -0.5
109,661 - GFF4533 0.38 +0.8
109,661 - GFF4533 0.38 -0.3
109,661 - GFF4533 0.38 -0.2
109,661 - GFF4533 0.38 +0.2
109,661 - GFF4533 0.38 +0.3
109,675 + GFF4533 0.38 +0.7
109,737 + GFF4533 0.41 +0.2
109,804 + GFF4533 0.44 +0.1
109,804 + GFF4533 0.44 -0.0
109,804 + GFF4533 0.44 +1.3
109,804 + GFF4533 0.44 -0.7
109,804 + GFF4533 0.44 +0.8
109,804 + GFF4533 0.44 -0.6
109,804 + GFF4533 0.44 +0.4
109,805 - GFF4533 0.44 +0.5
109,805 - GFF4533 0.44 -0.6
109,820 - GFF4533 0.44 +1.6
109,835 - GFF4533 0.45 +1.4
109,836 + GFF4533 0.45 -0.2
109,999 + GFF4533 0.52 -0.5
109,999 + GFF4533 0.52 +0.4
110,000 - GFF4533 0.52 -0.6
110,000 - GFF4533 0.52 -0.4
110,000 - GFF4533 0.52 -0.6
110,000 - GFF4533 0.52 -0.0
110,000 - GFF4533 0.52 -0.3
110,038 + GFF4533 0.53 -0.8
110,149 + GFF4533 0.58 -0.9
110,149 + GFF4533 0.58 +0.5
110,149 + GFF4533 0.58 -0.6
110,149 + GFF4533 0.58 +0.5
110,215 + GFF4533 0.61 +0.5
110,401 + GFF4533 0.69 +0.5
110,402 - GFF4533 0.69 +0.6
110,402 - GFF4533 0.69 -0.2
110,402 - GFF4533 0.69 -0.2
110,587 + GFF4533 0.76 -0.2
110,588 - GFF4533 0.76 +0.1
110,650 + GFF4533 0.79 -0.7
110,683 + GFF4533 0.80 -0.2
110,746 + GFF4533 0.83 -0.2
110,746 + GFF4533 0.83 -0.3
110,806 + GFF4533 0.85 +0.9
110,806 + GFF4533 0.85 -1.3
110,806 + GFF4533 0.85 +0.3
110,807 - GFF4533 0.85 -0.3
110,899 + GFF4533 0.89 +0.1
110,899 + GFF4533 0.89 -1.1
110,899 + GFF4533 0.89 +0.1
110,900 - GFF4533 0.89 +0.5
110,900 - GFF4533 0.89 +0.8
110,900 - GFF4533 0.89 +0.5
110,900 - GFF4533 0.89 -0.5
111,570 - GFF4534 0.51 +0.1

Or see this region's nucleotide sequence