Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF452 and GFF453 are separated by 252 nucleotides GFF453 and GFF454 overlap by 11 nucleotides
GFF452 - hypothetical protein, at 476,056 to 481,188
GFF452
GFF453 - Transcriptional regulatory protein tctD, at 481,441 to 482,109
GFF453
GFF454 - Sensor protein QseC, at 482,099 to 483,481
GFF454
Position (kb) 481
482
483 Strain fitness (log2 ratio) -2
-1
0
1 at 480.589 kb on - strand, within GFF452 at 480.589 kb on - strand, within GFF452 at 480.589 kb on - strand, within GFF452 at 480.609 kb on - strand, within GFF452 at 480.704 kb on + strand at 480.708 kb on - strand at 480.831 kb on - strand at 480.918 kb on + strand at 481.100 kb on + strand at 481.101 kb on - strand at 481.101 kb on - strand at 481.101 kb on - strand at 481.101 kb on - strand at 481.275 kb on - strand at 481.335 kb on - strand at 481.574 kb on - strand, within GFF453 at 481.732 kb on + strand, within GFF453 at 482.017 kb on + strand, within GFF453 at 482.017 kb on + strand, within GFF453 at 482.017 kb on + strand, within GFF453 at 482.017 kb on + strand, within GFF453 at 482.087 kb on - strand at 482.352 kb on - strand, within GFF454 at 482.457 kb on - strand, within GFF454 at 482.457 kb on - strand, within GFF454 at 482.457 kb on - strand, within GFF454 at 482.457 kb on - strand, within GFF454 at 482.493 kb on - strand, within GFF454 at 482.613 kb on + strand, within GFF454 at 482.613 kb on + strand, within GFF454 at 482.613 kb on + strand, within GFF454 at 482.780 kb on + strand, within GFF454 at 482.780 kb on + strand, within GFF454 at 482.780 kb on + strand, within GFF454 at 482.780 kb on + strand, within GFF454 at 482.780 kb on + strand, within GFF454 at 482.780 kb on + strand, within GFF454 at 482.780 kb on + strand, within GFF454 at 482.780 kb on + strand, within GFF454 at 482.780 kb on + strand, within GFF454 at 482.780 kb on + strand, within GFF454 at 482.780 kb on + strand, within GFF454 at 482.781 kb on - strand, within GFF454 at 482.781 kb on - strand, within GFF454 at 482.781 kb on - strand, within GFF454 at 482.781 kb on - strand, within GFF454 at 482.781 kb on - strand, within GFF454 at 482.783 kb on - strand, within GFF454
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 480,589 - GFF452 0.88 -0.6 480,589 - GFF452 0.88 -1.3 480,589 - GFF452 0.88 -0.1 480,609 - GFF452 0.89 +1.1 480,704 + +0.3 480,708 - +1.1 480,831 - +0.7 480,918 + -0.1 481,100 + +0.6 481,101 - -0.5 481,101 - -0.2 481,101 - -0.3 481,101 - -0.4 481,275 - -0.3 481,335 - -0.2 481,574 - GFF453 0.20 -1.7 481,732 + GFF453 0.43 -0.8 482,017 + GFF453 0.86 -0.3 482,017 + GFF453 0.86 -0.9 482,017 + GFF453 0.86 -0.9 482,017 + GFF453 0.86 +1.7 482,087 - -0.7 482,352 - GFF454 0.18 -1.1 482,457 - GFF454 0.26 +0.5 482,457 - GFF454 0.26 +0.3 482,457 - GFF454 0.26 -1.0 482,457 - GFF454 0.26 +0.1 482,493 - GFF454 0.28 -0.2 482,613 + GFF454 0.37 -1.0 482,613 + GFF454 0.37 -0.8 482,613 + GFF454 0.37 +0.8 482,780 + GFF454 0.49 -0.2 482,780 + GFF454 0.49 -0.6 482,780 + GFF454 0.49 +0.4 482,780 + GFF454 0.49 +1.0 482,780 + GFF454 0.49 -0.9 482,780 + GFF454 0.49 -0.9 482,780 + GFF454 0.49 +1.3 482,780 + GFF454 0.49 +0.9 482,780 + GFF454 0.49 +0.3 482,780 + GFF454 0.49 +0.2 482,780 + GFF454 0.49 -1.9 482,781 - GFF454 0.49 +0.1 482,781 - GFF454 0.49 -1.9 482,781 - GFF454 0.49 +1.0 482,781 - GFF454 0.49 -0.9 482,781 - GFF454 0.49 +0.0 482,783 - GFF454 0.49 -1.5
Or see this region's nucleotide sequence