Strain Fitness in Xanthobacter sp. DMC5 around GFF4520

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4517 and GFF4518 overlap by 4 nucleotidesGFF4518 and GFF4519 are separated by 0 nucleotidesGFF4519 and GFF4520 overlap by 1 nucleotidesGFF4520 and GFF4521 overlap by 4 nucleotides GFF4517 - Sensor histidine kinase RcsC, at 90,210 to 92,882 GFF4517 GFF4518 - hypothetical protein, at 92,879 to 93,391 GFF4518 GFF4519 - Chemotaxis protein CheY, at 93,392 to 93,769 GFF4519 GFF4520 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 93,769 to 94,914 GFF4520 GFF4521 - Chemotaxis protein methyltransferase 1, at 94,911 to 95,756 GFF4521 Position (kb) 93 94 95Strain fitness (log2 ratio) -1 0 1at 92.890 kb on + strandat 92.943 kb on - strand, within GFF4518at 92.943 kb on - strand, within GFF4518at 92.943 kb on - strand, within GFF4518at 92.943 kb on - strand, within GFF4518at 93.181 kb on + strand, within GFF4518at 93.181 kb on + strand, within GFF4518at 93.181 kb on + strand, within GFF4518at 93.182 kb on - strand, within GFF4518at 93.693 kb on - strand, within GFF4519at 93.693 kb on - strand, within GFF4519at 94.120 kb on + strand, within GFF4520at 94.120 kb on + strand, within GFF4520at 94.120 kb on + strand, within GFF4520at 94.121 kb on - strand, within GFF4520at 94.318 kb on + strand, within GFF4520at 94.318 kb on + strand, within GFF4520at 94.319 kb on - strand, within GFF4520at 94.408 kb on + strand, within GFF4520at 94.409 kb on - strand, within GFF4520at 94.409 kb on - strand, within GFF4520at 94.409 kb on - strand, within GFF4520at 94.410 kb on + strand, within GFF4520at 94.410 kb on + strand, within GFF4520at 94.411 kb on - strand, within GFF4520at 94.549 kb on + strand, within GFF4520at 94.550 kb on - strand, within GFF4520at 94.550 kb on - strand, within GFF4520at 94.684 kb on + strand, within GFF4520at 94.684 kb on + strand, within GFF4520at 94.684 kb on + strand, within GFF4520at 94.992 kb on + strandat 94.992 kb on + strandat 94.992 kb on + strandat 94.992 kb on + strandat 94.993 kb on - strandat 94.993 kb on - strandat 94.993 kb on - strandat 94.993 kb on - strandat 95.262 kb on + strand, within GFF4521at 95.263 kb on - strand, within GFF4521at 95.376 kb on + strand, within GFF4521at 95.376 kb on + strand, within GFF4521at 95.376 kb on + strand, within GFF4521at 95.377 kb on - strand, within GFF4521at 95.377 kb on - strand, within GFF4521at 95.377 kb on - strand, within GFF4521at 95.428 kb on - strand, within GFF4521at 95.428 kb on - strand, within GFF4521at 95.428 kb on - strand, within GFF4521at 95.487 kb on + strand, within GFF4521at 95.528 kb on + strand, within GFF4521at 95.529 kb on - strand, within GFF4521at 95.529 kb on - strand, within GFF4521at 95.565 kb on + strand, within GFF4521at 95.566 kb on - strand, within GFF4521at 95.709 kb on + strandat 95.709 kb on + strandat 95.709 kb on + strandat 95.710 kb on - strandat 95.896 kb on + strandat 95.897 kb on - strandat 95.897 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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92,890 + -0.5
92,943 - GFF4518 0.12 +0.7
92,943 - GFF4518 0.12 -1.0
92,943 - GFF4518 0.12 +1.2
92,943 - GFF4518 0.12 -0.8
93,181 + GFF4518 0.59 -0.1
93,181 + GFF4518 0.59 +0.1
93,181 + GFF4518 0.59 +1.2
93,182 - GFF4518 0.59 -0.2
93,693 - GFF4519 0.80 +0.5
93,693 - GFF4519 0.80 +1.4
94,120 + GFF4520 0.31 +0.2
94,120 + GFF4520 0.31 -0.1
94,120 + GFF4520 0.31 +0.2
94,121 - GFF4520 0.31 -0.6
94,318 + GFF4520 0.48 -1.2
94,318 + GFF4520 0.48 -1.0
94,319 - GFF4520 0.48 -0.1
94,408 + GFF4520 0.56 -0.6
94,409 - GFF4520 0.56 -0.3
94,409 - GFF4520 0.56 -1.6
94,409 - GFF4520 0.56 -1.4
94,410 + GFF4520 0.56 -1.1
94,410 + GFF4520 0.56 -0.9
94,411 - GFF4520 0.56 -0.7
94,549 + GFF4520 0.68 +0.8
94,550 - GFF4520 0.68 -0.7
94,550 - GFF4520 0.68 -0.4
94,684 + GFF4520 0.80 -0.6
94,684 + GFF4520 0.80 +0.6
94,684 + GFF4520 0.80 +0.1
94,992 + -0.8
94,992 + +0.6
94,992 + +0.9
94,992 + +0.5
94,993 - -0.4
94,993 - -1.0
94,993 - +0.0
94,993 - -1.0
95,262 + GFF4521 0.41 -0.1
95,263 - GFF4521 0.42 -0.4
95,376 + GFF4521 0.55 +0.2
95,376 + GFF4521 0.55 +0.5
95,376 + GFF4521 0.55 +1.6
95,377 - GFF4521 0.55 -0.6
95,377 - GFF4521 0.55 -0.5
95,377 - GFF4521 0.55 +0.1
95,428 - GFF4521 0.61 +1.1
95,428 - GFF4521 0.61 +0.5
95,428 - GFF4521 0.61 -0.5
95,487 + GFF4521 0.68 -0.1
95,528 + GFF4521 0.73 +1.0
95,529 - GFF4521 0.73 -0.6
95,529 - GFF4521 0.73 +1.6
95,565 + GFF4521 0.77 -0.3
95,566 - GFF4521 0.77 +0.6
95,709 + -0.3
95,709 + +1.7
95,709 + +1.3
95,710 - -0.1
95,896 + +0.3
95,897 - +0.9
95,897 - -1.0

Or see this region's nucleotide sequence