Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4513 and GFF4514 are separated by 50 nucleotides GFF4514 and GFF4515 overlap by 4 nucleotides GFF4515 and GFF4516 overlap by 4 nucleotides GFF4516 and GFF4517 are separated by 90 nucleotides
GFF4513 - hypothetical protein, at 88,152 to 88,553
GFF4513
GFF4514 - hypothetical protein, at 88,604 to 89,179
GFF4514
GFF4515 - hypothetical protein, at 89,176 to 89,565
GFF4515
GFF4516 - hypothetical protein, at 89,562 to 90,119
GFF4516
GFF4517 - Sensor histidine kinase RcsC, at 90,210 to 92,882
GFF4517
Position (kb) 89
90 Strain fitness (log2 ratio) -1
0
1 at 88.551 kb on + strand at 88.551 kb on + strand at 88.551 kb on + strand at 88.552 kb on - strand at 88.552 kb on - strand at 88.552 kb on - strand at 88.925 kb on - strand, within GFF4514 at 88.927 kb on + strand, within GFF4514 at 88.928 kb on - strand, within GFF4514 at 88.928 kb on - strand, within GFF4514 at 88.947 kb on + strand, within GFF4514 at 88.948 kb on - strand, within GFF4514 at 89.441 kb on - strand, within GFF4515 at 89.441 kb on - strand, within GFF4515 at 89.441 kb on - strand, within GFF4515 at 89.441 kb on - strand, within GFF4515 at 89.441 kb on - strand, within GFF4515 at 89.528 kb on - strand at 89.620 kb on - strand, within GFF4516 at 89.634 kb on + strand, within GFF4516 at 89.634 kb on + strand, within GFF4516 at 89.635 kb on - strand, within GFF4516 at 89.671 kb on - strand, within GFF4516 at 89.746 kb on - strand, within GFF4516 at 89.746 kb on - strand, within GFF4516 at 89.746 kb on - strand, within GFF4516 at 89.746 kb on - strand, within GFF4516 at 89.847 kb on + strand, within GFF4516 at 89.847 kb on + strand, within GFF4516 at 89.848 kb on - strand, within GFF4516 at 89.848 kb on - strand, within GFF4516 at 89.848 kb on - strand, within GFF4516 at 89.848 kb on - strand, within GFF4516 at 89.889 kb on - strand, within GFF4516 at 89.930 kb on + strand, within GFF4516 at 89.930 kb on + strand, within GFF4516 at 89.931 kb on - strand, within GFF4516 at 89.931 kb on - strand, within GFF4516 at 89.931 kb on - strand, within GFF4516 at 89.931 kb on - strand, within GFF4516 at 89.931 kb on - strand, within GFF4516 at 89.934 kb on + strand, within GFF4516 at 89.934 kb on + strand, within GFF4516 at 89.935 kb on - strand, within GFF4516 at 89.982 kb on + strand, within GFF4516 at 89.983 kb on - strand, within GFF4516 at 89.984 kb on + strand, within GFF4516 at 89.985 kb on - strand, within GFF4516
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 88,551 + +0.8 88,551 + -0.4 88,551 + -0.5 88,552 - -0.9 88,552 - -0.8 88,552 - -0.2 88,925 - GFF4514 0.56 +0.1 88,927 + GFF4514 0.56 -0.2 88,928 - GFF4514 0.56 +0.2 88,928 - GFF4514 0.56 -0.3 88,947 + GFF4514 0.60 +1.0 88,948 - GFF4514 0.60 +0.9 89,441 - GFF4515 0.68 -0.9 89,441 - GFF4515 0.68 +0.6 89,441 - GFF4515 0.68 +0.7 89,441 - GFF4515 0.68 -1.0 89,441 - GFF4515 0.68 -0.6 89,528 - -0.1 89,620 - GFF4516 0.10 +0.6 89,634 + GFF4516 0.13 -1.6 89,634 + GFF4516 0.13 -0.5 89,635 - GFF4516 0.13 +0.3 89,671 - GFF4516 0.20 +0.2 89,746 - GFF4516 0.33 -1.0 89,746 - GFF4516 0.33 -0.8 89,746 - GFF4516 0.33 -0.4 89,746 - GFF4516 0.33 +0.2 89,847 + GFF4516 0.51 +0.5 89,847 + GFF4516 0.51 +0.4 89,848 - GFF4516 0.51 +0.5 89,848 - GFF4516 0.51 -0.6 89,848 - GFF4516 0.51 -0.0 89,848 - GFF4516 0.51 -0.5 89,889 - GFF4516 0.59 +0.5 89,930 + GFF4516 0.66 +0.1 89,930 + GFF4516 0.66 +0.9 89,931 - GFF4516 0.66 +0.3 89,931 - GFF4516 0.66 +0.6 89,931 - GFF4516 0.66 -0.6 89,931 - GFF4516 0.66 +0.9 89,931 - GFF4516 0.66 +0.5 89,934 + GFF4516 0.67 -0.7 89,934 + GFF4516 0.67 -0.3 89,935 - GFF4516 0.67 +0.6 89,982 + GFF4516 0.75 +0.8 89,983 - GFF4516 0.75 -0.1 89,984 + GFF4516 0.76 -0.3 89,985 - GFF4516 0.76 +0.7
Or see this region's nucleotide sequence