Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4480 and GFF4481 are separated by 12 nucleotides GFF4481 and GFF4482 overlap by 4 nucleotides GFF4482 and GFF4483 are separated by 306 nucleotides
GFF4480 - hypothetical protein, at 59,823 to 60,959
GFF4480
GFF4481 - hypothetical protein, at 60,972 to 61,637
GFF4481
GFF4482 - Flagellar M-ring protein, at 61,634 to 63,301
GFF4482
GFF4483 - hypothetical protein, at 63,608 to 64,651
GFF4483
Position (kb) 61
62
63
64 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 60.741 kb on - strand, within GFF4480 at 60.773 kb on - strand, within GFF4480 at 60.773 kb on - strand, within GFF4480 at 60.795 kb on - strand, within GFF4480 at 60.795 kb on - strand, within GFF4480 at 61.230 kb on + strand, within GFF4481 at 61.230 kb on + strand, within GFF4481 at 62.149 kb on - strand, within GFF4482 at 62.149 kb on - strand, within GFF4482 at 62.149 kb on - strand, within GFF4482 at 62.547 kb on + strand, within GFF4482 at 62.547 kb on + strand, within GFF4482 at 62.548 kb on - strand, within GFF4482 at 62.548 kb on - strand, within GFF4482 at 62.548 kb on - strand, within GFF4482 at 62.775 kb on - strand, within GFF4482 at 62.909 kb on + strand, within GFF4482 at 62.919 kb on - strand, within GFF4482 at 62.973 kb on + strand, within GFF4482 at 62.974 kb on - strand, within GFF4482 at 63.148 kb on - strand at 63.177 kb on + strand at 63.178 kb on - strand at 63.178 kb on - strand at 63.389 kb on - strand at 63.873 kb on + strand, within GFF4483 at 63.873 kb on + strand, within GFF4483 at 63.975 kb on + strand, within GFF4483 at 63.975 kb on + strand, within GFF4483 at 63.975 kb on + strand, within GFF4483 at 63.975 kb on + strand, within GFF4483 at 63.976 kb on - strand, within GFF4483 at 63.976 kb on - strand, within GFF4483 at 63.976 kb on - strand, within GFF4483 at 64.016 kb on - strand, within GFF4483 at 64.128 kb on + strand, within GFF4483 at 64.128 kb on + strand, within GFF4483 at 64.129 kb on - strand, within GFF4483 at 64.186 kb on + strand, within GFF4483
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 60,741 - GFF4480 0.81 -0.2 60,773 - GFF4480 0.84 -0.5 60,773 - GFF4480 0.84 +0.2 60,795 - GFF4480 0.85 -0.6 60,795 - GFF4480 0.85 +0.1 61,230 + GFF4481 0.39 -0.9 61,230 + GFF4481 0.39 -0.2 62,149 - GFF4482 0.31 -0.5 62,149 - GFF4482 0.31 +0.7 62,149 - GFF4482 0.31 +0.1 62,547 + GFF4482 0.55 -0.6 62,547 + GFF4482 0.55 -0.3 62,548 - GFF4482 0.55 +0.2 62,548 - GFF4482 0.55 -0.5 62,548 - GFF4482 0.55 +0.9 62,775 - GFF4482 0.68 -0.6 62,909 + GFF4482 0.76 +0.4 62,919 - GFF4482 0.77 +0.7 62,973 + GFF4482 0.80 -0.4 62,974 - GFF4482 0.80 -0.8 63,148 - -2.9 63,177 + +0.4 63,178 - +0.5 63,178 - +0.3 63,389 - -1.2 63,873 + GFF4483 0.25 -0.4 63,873 + GFF4483 0.25 +0.0 63,975 + GFF4483 0.35 +0.0 63,975 + GFF4483 0.35 -0.5 63,975 + GFF4483 0.35 -0.3 63,975 + GFF4483 0.35 -0.3 63,976 - GFF4483 0.35 -0.5 63,976 - GFF4483 0.35 +1.5 63,976 - GFF4483 0.35 +0.5 64,016 - GFF4483 0.39 +0.2 64,128 + GFF4483 0.50 -0.1 64,128 + GFF4483 0.50 -1.9 64,129 - GFF4483 0.50 -1.4 64,186 + GFF4483 0.55 -1.1
Or see this region's nucleotide sequence