Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4467 and GFF4468 are separated by 37 nucleotides GFF4468 and GFF4469 are separated by 214 nucleotides GFF4469 and GFF4470 overlap by 4 nucleotides
GFF4467 - RNA polymerase sigma-54 factor 2, at 45,259 to 46,824
GFF4467
GFF4468 - Vitamin B12 import ATP-binding protein BtuD, at 46,862 to 47,953
GFF4468
GFF4469 - Lipopolysaccharide export system protein LptA, at 48,168 to 48,824
GFF4469
GFF4470 - hypothetical protein, at 48,821 to 49,708
GFF4470
Position (kb) 46
47
48 Strain fitness (log2 ratio) -1
0
1
2
3 at 45.896 kb on + strand, within GFF4467 at 45.896 kb on + strand, within GFF4467 at 45.897 kb on - strand, within GFF4467 at 45.897 kb on - strand, within GFF4467 at 46.248 kb on - strand, within GFF4467 at 46.382 kb on + strand, within GFF4467 at 46.382 kb on + strand, within GFF4467 at 46.383 kb on - strand, within GFF4467 at 46.712 kb on + strand at 46.712 kb on + strand at 46.712 kb on + strand at 46.713 kb on - strand at 46.713 kb on - strand at 46.728 kb on + strand at 46.728 kb on + strand at 46.728 kb on + strand at 46.729 kb on - strand at 47.623 kb on - strand, within GFF4468 at 48.083 kb on + strand at 48.887 kb on - strand at 48.905 kb on - strand at 48.905 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 45,896 + GFF4467 0.41 +3.0 45,896 + GFF4467 0.41 +2.3 45,897 - GFF4467 0.41 +2.8 45,897 - GFF4467 0.41 +2.8 46,248 - GFF4467 0.63 +2.9 46,382 + GFF4467 0.72 +2.8 46,382 + GFF4467 0.72 +2.5 46,383 - GFF4467 0.72 +1.4 46,712 + +1.2 46,712 + +2.7 46,712 + +2.3 46,713 - +2.3 46,713 - +2.6 46,728 + +2.1 46,728 + +2.6 46,728 + +2.5 46,729 - +2.7 47,623 - GFF4468 0.70 -0.7 48,083 + -0.6 48,887 - +0.1 48,905 - +0.6 48,905 - -0.3
Or see this region's nucleotide sequence