Strain Fitness in Xanthobacter sp. DMC5 around GFF4457

Experiment: D,L-Lactate and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4456 and GFF4457 are separated by 295 nucleotidesGFF4457 and GFF4458 are separated by 207 nucleotides GFF4456 - Molybdenum storage protein subunit alpha, at 33,904 to 34,740 GFF4456 GFF4457 - hypothetical protein, at 35,036 to 36,736 GFF4457 GFF4458 - Transcriptional regulatory protein ZraR, at 36,944 to 38,356 GFF4458 Position (kb) 35 36 37Strain fitness (log2 ratio) -1 0 1 2at 34.165 kb on + strand, within GFF4456at 34.245 kb on + strand, within GFF4456at 34.282 kb on + strand, within GFF4456at 34.283 kb on - strand, within GFF4456at 34.283 kb on - strand, within GFF4456at 34.489 kb on + strand, within GFF4456at 34.489 kb on + strand, within GFF4456at 34.490 kb on - strand, within GFF4456at 34.549 kb on + strand, within GFF4456at 34.907 kb on - strandat 35.303 kb on + strand, within GFF4457at 35.303 kb on + strand, within GFF4457at 35.303 kb on + strand, within GFF4457at 35.304 kb on - strand, within GFF4457at 35.304 kb on - strand, within GFF4457at 35.304 kb on - strand, within GFF4457at 35.304 kb on - strand, within GFF4457at 35.304 kb on - strand, within GFF4457at 35.442 kb on - strand, within GFF4457at 35.442 kb on - strand, within GFF4457at 35.510 kb on + strand, within GFF4457at 35.510 kb on + strand, within GFF4457at 35.510 kb on + strand, within GFF4457at 35.510 kb on + strand, within GFF4457at 35.640 kb on - strand, within GFF4457at 35.640 kb on - strand, within GFF4457at 35.640 kb on - strand, within GFF4457at 35.640 kb on - strand, within GFF4457at 35.699 kb on + strand, within GFF4457at 35.700 kb on - strand, within GFF4457at 35.700 kb on - strand, within GFF4457at 36.107 kb on + strand, within GFF4457at 36.107 kb on + strand, within GFF4457at 36.107 kb on + strand, within GFF4457at 36.108 kb on - strand, within GFF4457at 36.108 kb on - strand, within GFF4457at 36.108 kb on - strand, within GFF4457at 36.108 kb on - strand, within GFF4457at 36.108 kb on - strand, within GFF4457at 36.108 kb on - strand, within GFF4457at 36.108 kb on - strand, within GFF4457at 36.218 kb on + strand, within GFF4457at 36.219 kb on - strand, within GFF4457at 36.219 kb on - strand, within GFF4457at 36.219 kb on - strand, within GFF4457at 36.219 kb on - strand, within GFF4457at 36.219 kb on - strand, within GFF4457at 36.219 kb on - strand, within GFF4457at 36.219 kb on - strand, within GFF4457at 36.350 kb on + strand, within GFF4457at 36.350 kb on + strand, within GFF4457at 36.350 kb on + strand, within GFF4457at 36.351 kb on - strand, within GFF4457at 36.362 kb on + strand, within GFF4457at 36.398 kb on + strand, within GFF4457at 36.399 kb on - strand, within GFF4457at 36.399 kb on - strand, within GFF4457at 36.399 kb on - strand, within GFF4457at 36.413 kb on + strand, within GFF4457at 36.413 kb on + strand, within GFF4457at 36.413 kb on + strand, within GFF4457at 36.413 kb on + strand, within GFF4457at 36.413 kb on + strand, within GFF4457at 36.414 kb on - strand, within GFF4457at 36.414 kb on - strand, within GFF4457at 36.414 kb on - strand, within GFF4457at 36.414 kb on - strand, within GFF4457at 36.485 kb on + strand, within GFF4457at 36.485 kb on + strand, within GFF4457at 36.485 kb on + strand, within GFF4457at 36.485 kb on + strand, within GFF4457at 36.486 kb on - strand, within GFF4457at 36.486 kb on - strand, within GFF4457

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
remove
34,165 + GFF4456 0.31 -0.3
34,245 + GFF4456 0.41 -0.1
34,282 + GFF4456 0.45 -0.7
34,283 - GFF4456 0.45 -0.3
34,283 - GFF4456 0.45 +0.9
34,489 + GFF4456 0.70 +0.9
34,489 + GFF4456 0.70 -0.0
34,490 - GFF4456 0.70 +1.1
34,549 + GFF4456 0.77 -0.1
34,907 - +0.9
35,303 + GFF4457 0.16 +0.5
35,303 + GFF4457 0.16 -1.4
35,303 + GFF4457 0.16 -1.0
35,304 - GFF4457 0.16 +1.1
35,304 - GFF4457 0.16 -0.3
35,304 - GFF4457 0.16 -0.3
35,304 - GFF4457 0.16 +0.1
35,304 - GFF4457 0.16 +0.2
35,442 - GFF4457 0.24 +0.5
35,442 - GFF4457 0.24 -0.3
35,510 + GFF4457 0.28 +0.1
35,510 + GFF4457 0.28 +0.1
35,510 + GFF4457 0.28 -1.2
35,510 + GFF4457 0.28 -0.3
35,640 - GFF4457 0.36 +0.3
35,640 - GFF4457 0.36 -1.1
35,640 - GFF4457 0.36 -1.5
35,640 - GFF4457 0.36 +1.1
35,699 + GFF4457 0.39 +0.1
35,700 - GFF4457 0.39 +1.1
35,700 - GFF4457 0.39 -0.5
36,107 + GFF4457 0.63 +0.4
36,107 + GFF4457 0.63 +0.5
36,107 + GFF4457 0.63 +0.9
36,108 - GFF4457 0.63 +2.7
36,108 - GFF4457 0.63 -0.6
36,108 - GFF4457 0.63 -0.1
36,108 - GFF4457 0.63 +0.2
36,108 - GFF4457 0.63 +1.3
36,108 - GFF4457 0.63 +0.2
36,108 - GFF4457 0.63 +0.2
36,218 + GFF4457 0.69 +0.3
36,219 - GFF4457 0.70 +0.7
36,219 - GFF4457 0.70 -0.9
36,219 - GFF4457 0.70 -0.6
36,219 - GFF4457 0.70 +0.1
36,219 - GFF4457 0.70 -0.7
36,219 - GFF4457 0.70 +0.3
36,219 - GFF4457 0.70 +1.1
36,350 + GFF4457 0.77 -0.1
36,350 + GFF4457 0.77 +1.3
36,350 + GFF4457 0.77 +0.0
36,351 - GFF4457 0.77 +0.5
36,362 + GFF4457 0.78 +1.2
36,398 + GFF4457 0.80 +1.5
36,399 - GFF4457 0.80 +1.2
36,399 - GFF4457 0.80 -0.3
36,399 - GFF4457 0.80 +0.7
36,413 + GFF4457 0.81 +0.3
36,413 + GFF4457 0.81 -0.1
36,413 + GFF4457 0.81 +0.2
36,413 + GFF4457 0.81 -0.4
36,413 + GFF4457 0.81 +0.1
36,414 - GFF4457 0.81 +2.0
36,414 - GFF4457 0.81 +0.3
36,414 - GFF4457 0.81 +0.3
36,414 - GFF4457 0.81 +0.2
36,485 + GFF4457 0.85 +0.9
36,485 + GFF4457 0.85 -0.6
36,485 + GFF4457 0.85 -0.5
36,485 + GFF4457 0.85 +0.1
36,486 - GFF4457 0.85 +0.9
36,486 - GFF4457 0.85 -0.3

Or see this region's nucleotide sequence