Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4449 and GFF4450 are separated by 70 nucleotides GFF4450 and GFF4451 are separated by 106 nucleotides GFF4451 and GFF4452 are separated by 222 nucleotides GFF4452 and GFF4453 are separated by 115 nucleotides
GFF4449 - Organic hydroperoxide resistance transcriptional regulator, at 24,931 to 25,440
GFF4449
GFF4450 - hypothetical protein, at 25,511 to 26,212
GFF4450
GFF4451 - Sensor histidine kinase RcsC, at 26,319 to 29,822
GFF4451
GFF4452 - hypothetical protein, at 30,045 to 30,251
GFF4452
GFF4453 - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE, at 30,367 to 31,167
GFF4453
Position (kb) 26
27
28
29
30 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 25.913 kb on + strand, within GFF4450 at 25.913 kb on + strand, within GFF4450 at 25.914 kb on - strand, within GFF4450 at 25.914 kb on - strand, within GFF4450 at 26.103 kb on - strand, within GFF4450 at 26.115 kb on - strand, within GFF4450 at 26.115 kb on - strand, within GFF4450 at 26.123 kb on + strand, within GFF4450 at 26.124 kb on - strand, within GFF4450 at 26.125 kb on + strand, within GFF4450 at 26.125 kb on + strand, within GFF4450 at 26.246 kb on + strand at 26.247 kb on - strand at 26.247 kb on - strand at 26.318 kb on + strand at 26.318 kb on + strand at 26.319 kb on - strand at 26.359 kb on - strand at 26.359 kb on - strand at 26.442 kb on + strand at 26.442 kb on + strand at 26.442 kb on + strand at 26.443 kb on - strand at 26.463 kb on + strand at 26.464 kb on - strand at 26.464 kb on - strand at 26.464 kb on - strand at 26.535 kb on + strand at 26.535 kb on + strand at 27.267 kb on + strand, within GFF4451 at 27.268 kb on - strand, within GFF4451 at 27.268 kb on - strand, within GFF4451 at 27.268 kb on - strand, within GFF4451 at 27.371 kb on - strand, within GFF4451 at 27.371 kb on - strand, within GFF4451 at 27.412 kb on + strand, within GFF4451 at 27.412 kb on + strand, within GFF4451 at 27.413 kb on - strand, within GFF4451 at 27.522 kb on + strand, within GFF4451 at 27.522 kb on + strand, within GFF4451 at 27.522 kb on + strand, within GFF4451 at 27.523 kb on - strand, within GFF4451 at 27.529 kb on - strand, within GFF4451 at 27.532 kb on - strand, within GFF4451 at 27.690 kb on + strand, within GFF4451 at 27.690 kb on + strand, within GFF4451 at 27.690 kb on + strand, within GFF4451 at 27.690 kb on + strand, within GFF4451 at 27.690 kb on + strand, within GFF4451 at 27.691 kb on - strand, within GFF4451 at 27.692 kb on + strand, within GFF4451 at 27.692 kb on + strand, within GFF4451 at 27.692 kb on + strand, within GFF4451 at 27.693 kb on - strand, within GFF4451 at 27.693 kb on - strand, within GFF4451 at 28.053 kb on + strand, within GFF4451 at 28.054 kb on - strand, within GFF4451 at 28.054 kb on - strand, within GFF4451 at 28.054 kb on - strand, within GFF4451 at 28.054 kb on - strand, within GFF4451 at 28.251 kb on + strand, within GFF4451 at 28.251 kb on + strand, within GFF4451 at 28.252 kb on - strand, within GFF4451 at 28.380 kb on + strand, within GFF4451 at 28.381 kb on - strand, within GFF4451 at 28.381 kb on - strand, within GFF4451 at 28.400 kb on + strand, within GFF4451 at 28.471 kb on - strand, within GFF4451 at 29.110 kb on - strand, within GFF4451 at 29.110 kb on - strand, within GFF4451 at 29.157 kb on - strand, within GFF4451 at 29.168 kb on - strand, within GFF4451 at 29.175 kb on + strand, within GFF4451 at 29.175 kb on + strand, within GFF4451 at 29.607 kb on + strand at 29.607 kb on + strand at 29.607 kb on + strand at 29.837 kb on + strand at 29.877 kb on + strand at 30.299 kb on + strand at 30.299 kb on + strand at 30.324 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 25,913 + GFF4450 0.57 -0.8 25,913 + GFF4450 0.57 +0.5 25,914 - GFF4450 0.57 -0.5 25,914 - GFF4450 0.57 +1.7 26,103 - GFF4450 0.84 -0.1 26,115 - GFF4450 0.86 +0.9 26,115 - GFF4450 0.86 +1.0 26,123 + GFF4450 0.87 -0.0 26,124 - GFF4450 0.87 -0.3 26,125 + GFF4450 0.87 +0.2 26,125 + GFF4450 0.87 +0.2 26,246 + +0.5 26,247 - +0.4 26,247 - +2.5 26,318 + -0.4 26,318 + -0.4 26,319 - +0.9 26,359 - +1.1 26,359 - -1.7 26,442 + -0.5 26,442 + +0.3 26,442 + -0.5 26,443 - +3.2 26,463 + +1.8 26,464 - -0.6 26,464 - +1.5 26,464 - +0.4 26,535 + +1.3 26,535 + -0.6 27,267 + GFF4451 0.27 -0.2 27,268 - GFF4451 0.27 +1.0 27,268 - GFF4451 0.27 +0.2 27,268 - GFF4451 0.27 +1.1 27,371 - GFF4451 0.30 +1.3 27,371 - GFF4451 0.30 -1.8 27,412 + GFF4451 0.31 -0.3 27,412 + GFF4451 0.31 +0.8 27,413 - GFF4451 0.31 +0.1 27,522 + GFF4451 0.34 +0.6 27,522 + GFF4451 0.34 +0.1 27,522 + GFF4451 0.34 +0.1 27,523 - GFF4451 0.34 +0.8 27,529 - GFF4451 0.35 +0.6 27,532 - GFF4451 0.35 +0.9 27,690 + GFF4451 0.39 -0.4 27,690 + GFF4451 0.39 -0.3 27,690 + GFF4451 0.39 -0.0 27,690 + GFF4451 0.39 +0.9 27,690 + GFF4451 0.39 +0.3 27,691 - GFF4451 0.39 +0.3 27,692 + GFF4451 0.39 +0.5 27,692 + GFF4451 0.39 +0.1 27,692 + GFF4451 0.39 -0.9 27,693 - GFF4451 0.39 +1.7 27,693 - GFF4451 0.39 +0.0 28,053 + GFF4451 0.49 +1.2 28,054 - GFF4451 0.50 +0.1 28,054 - GFF4451 0.50 +0.5 28,054 - GFF4451 0.50 -2.4 28,054 - GFF4451 0.50 +0.7 28,251 + GFF4451 0.55 +0.5 28,251 + GFF4451 0.55 +0.3 28,252 - GFF4451 0.55 -0.9 28,380 + GFF4451 0.59 +1.1 28,381 - GFF4451 0.59 -0.2 28,381 - GFF4451 0.59 -0.1 28,400 + GFF4451 0.59 +0.1 28,471 - GFF4451 0.61 -0.6 29,110 - GFF4451 0.80 +1.1 29,110 - GFF4451 0.80 -1.2 29,157 - GFF4451 0.81 -0.2 29,168 - GFF4451 0.81 +1.7 29,175 + GFF4451 0.82 -0.8 29,175 + GFF4451 0.82 -0.0 29,607 + -1.5 29,607 + +0.2 29,607 + +0.1 29,837 + -0.3 29,877 + -1.0 30,299 + +0.7 30,299 + -0.5 30,324 + -2.9
Or see this region's nucleotide sequence