Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4442 and GFF4443 are separated by 13 nucleotides GFF4443 and GFF4444 overlap by 4 nucleotides
GFF4442 - putative Ni/Fe-hydrogenase B-type cytochrome subunit, at 18,210 to 18,965
GFF4442
GFF4443 - Uptake hydrogenase large subunit, at 18,979 to 20,793
GFF4443
GFF4444 - Uptake hydrogenase small subunit, at 20,790 to 21,896
GFF4444
Position (kb) 18
19
20
21 Strain fitness (log2 ratio) -2
-1
0
1
2 at 17.988 kb on + strand at 18.011 kb on - strand at 18.011 kb on - strand at 18.072 kb on - strand at 18.304 kb on + strand, within GFF4442 at 18.304 kb on + strand, within GFF4442 at 18.305 kb on - strand, within GFF4442 at 18.445 kb on + strand, within GFF4442 at 18.446 kb on - strand, within GFF4442 at 18.507 kb on + strand, within GFF4442 at 18.508 kb on - strand, within GFF4442 at 18.640 kb on + strand, within GFF4442 at 18.640 kb on + strand, within GFF4442 at 18.640 kb on + strand, within GFF4442 at 18.695 kb on + strand, within GFF4442 at 18.696 kb on - strand, within GFF4442 at 18.697 kb on + strand, within GFF4442 at 18.697 kb on + strand, within GFF4442 at 18.697 kb on + strand, within GFF4442 at 18.697 kb on + strand, within GFF4442 at 18.698 kb on - strand, within GFF4442 at 18.739 kb on + strand, within GFF4442 at 18.739 kb on + strand, within GFF4442 at 18.859 kb on + strand, within GFF4442 at 18.859 kb on + strand, within GFF4442 at 18.859 kb on + strand, within GFF4442 at 18.860 kb on - strand, within GFF4442 at 18.860 kb on - strand, within GFF4442 at 18.865 kb on + strand, within GFF4442 at 18.865 kb on + strand, within GFF4442 at 18.865 kb on + strand, within GFF4442 at 18.865 kb on + strand, within GFF4442 at 19.141 kb on - strand at 19.196 kb on + strand, within GFF4443 at 19.196 kb on + strand, within GFF4443 at 19.196 kb on + strand, within GFF4443 at 19.197 kb on - strand, within GFF4443 at 19.197 kb on - strand, within GFF4443 at 19.197 kb on - strand, within GFF4443 at 19.197 kb on - strand, within GFF4443 at 19.391 kb on + strand, within GFF4443 at 19.391 kb on + strand, within GFF4443 at 19.518 kb on - strand, within GFF4443 at 19.518 kb on - strand, within GFF4443 at 19.518 kb on - strand, within GFF4443 at 19.536 kb on - strand, within GFF4443 at 19.536 kb on - strand, within GFF4443 at 19.536 kb on - strand, within GFF4443 at 19.611 kb on - strand, within GFF4443 at 19.676 kb on + strand, within GFF4443 at 19.737 kb on - strand, within GFF4443 at 19.742 kb on + strand, within GFF4443 at 19.742 kb on + strand, within GFF4443 at 19.742 kb on + strand, within GFF4443 at 19.743 kb on - strand, within GFF4443 at 19.743 kb on - strand, within GFF4443 at 19.743 kb on - strand, within GFF4443 at 19.855 kb on - strand, within GFF4443 at 19.878 kb on - strand, within GFF4443 at 19.878 kb on - strand, within GFF4443 at 19.886 kb on + strand, within GFF4443 at 19.886 kb on + strand, within GFF4443 at 19.886 kb on + strand, within GFF4443 at 19.887 kb on - strand, within GFF4443 at 19.923 kb on - strand, within GFF4443 at 19.970 kb on + strand, within GFF4443 at 19.970 kb on + strand, within GFF4443 at 19.970 kb on + strand, within GFF4443 at 19.970 kb on + strand, within GFF4443 at 19.971 kb on - strand, within GFF4443 at 20.102 kb on + strand, within GFF4443 at 20.103 kb on - strand, within GFF4443 at 20.103 kb on - strand, within GFF4443 at 20.121 kb on + strand, within GFF4443 at 20.181 kb on - strand, within GFF4443 at 20.222 kb on + strand, within GFF4443 at 20.222 kb on + strand, within GFF4443 at 20.223 kb on - strand, within GFF4443 at 20.240 kb on + strand, within GFF4443 at 20.241 kb on - strand, within GFF4443 at 20.241 kb on - strand, within GFF4443 at 20.241 kb on - strand, within GFF4443 at 20.427 kb on - strand, within GFF4443 at 20.427 kb on - strand, within GFF4443 at 20.427 kb on - strand, within GFF4443 at 20.673 kb on + strand at 20.673 kb on + strand at 20.673 kb on + strand at 20.674 kb on - strand at 20.674 kb on - strand at 20.674 kb on - strand at 20.674 kb on - strand at 20.674 kb on - strand at 20.674 kb on - strand at 20.674 kb on - strand at 20.674 kb on - strand at 20.974 kb on + strand, within GFF4444 at 21.086 kb on - strand, within GFF4444 at 21.116 kb on - strand, within GFF4444 at 21.116 kb on - strand, within GFF4444 at 21.116 kb on - strand, within GFF4444 at 21.116 kb on - strand, within GFF4444 at 21.124 kb on + strand, within GFF4444 at 21.163 kb on + strand, within GFF4444 at 21.163 kb on + strand, within GFF4444 at 21.164 kb on - strand, within GFF4444 at 21.164 kb on - strand, within GFF4444 at 21.220 kb on + strand, within GFF4444 at 21.220 kb on + strand, within GFF4444 at 21.221 kb on - strand, within GFF4444 at 21.280 kb on + strand, within GFF4444 at 21.280 kb on + strand, within GFF4444 at 21.280 kb on + strand, within GFF4444 at 21.280 kb on + strand, within GFF4444 at 21.281 kb on - strand, within GFF4444 at 21.281 kb on - strand, within GFF4444 at 21.281 kb on - strand, within GFF4444 at 21.350 kb on - strand, within GFF4444 at 21.412 kb on + strand, within GFF4444 at 21.412 kb on + strand, within GFF4444 at 21.412 kb on + strand, within GFF4444 at 21.413 kb on - strand, within GFF4444 at 21.413 kb on - strand, within GFF4444 at 21.413 kb on - strand, within GFF4444 at 21.413 kb on - strand, within GFF4444 at 21.459 kb on + strand, within GFF4444 at 21.459 kb on + strand, within GFF4444 at 21.463 kb on + strand, within GFF4444 at 21.505 kb on + strand, within GFF4444 at 21.505 kb on + strand, within GFF4444 at 21.506 kb on - strand, within GFF4444 at 21.553 kb on + strand, within GFF4444 at 21.553 kb on + strand, within GFF4444 at 21.553 kb on + strand, within GFF4444 at 21.554 kb on - strand, within GFF4444 at 21.566 kb on - strand, within GFF4444
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 17,988 + +0.2 18,011 - +1.4 18,011 - -0.5 18,072 - -0.1 18,304 + GFF4442 0.12 +0.5 18,304 + GFF4442 0.12 +0.1 18,305 - GFF4442 0.13 +0.5 18,445 + GFF4442 0.31 +0.2 18,446 - GFF4442 0.31 +0.5 18,507 + GFF4442 0.39 +1.1 18,508 - GFF4442 0.39 -0.0 18,640 + GFF4442 0.57 +0.1 18,640 + GFF4442 0.57 +0.6 18,640 + GFF4442 0.57 +1.9 18,695 + GFF4442 0.64 +0.1 18,696 - GFF4442 0.64 +0.4 18,697 + GFF4442 0.64 +1.7 18,697 + GFF4442 0.64 +0.4 18,697 + GFF4442 0.64 +0.1 18,697 + GFF4442 0.64 +0.6 18,698 - GFF4442 0.65 -0.7 18,739 + GFF4442 0.70 +0.1 18,739 + GFF4442 0.70 +0.7 18,859 + GFF4442 0.86 +0.1 18,859 + GFF4442 0.86 -0.1 18,859 + GFF4442 0.86 -0.1 18,860 - GFF4442 0.86 +0.4 18,860 - GFF4442 0.86 +0.1 18,865 + GFF4442 0.87 +1.3 18,865 + GFF4442 0.87 +1.0 18,865 + GFF4442 0.87 +1.0 18,865 + GFF4442 0.87 +0.5 19,141 - -1.9 19,196 + GFF4443 0.12 -0.7 19,196 + GFF4443 0.12 +2.0 19,196 + GFF4443 0.12 +0.1 19,197 - GFF4443 0.12 -0.3 19,197 - GFF4443 0.12 +0.4 19,197 - GFF4443 0.12 -0.1 19,197 - GFF4443 0.12 -1.3 19,391 + GFF4443 0.23 +1.3 19,391 + GFF4443 0.23 +1.0 19,518 - GFF4443 0.30 -0.5 19,518 - GFF4443 0.30 -0.0 19,518 - GFF4443 0.30 -0.3 19,536 - GFF4443 0.31 -0.4 19,536 - GFF4443 0.31 -0.1 19,536 - GFF4443 0.31 +0.4 19,611 - GFF4443 0.35 +0.5 19,676 + GFF4443 0.38 +0.6 19,737 - GFF4443 0.42 +0.3 19,742 + GFF4443 0.42 -2.6 19,742 + GFF4443 0.42 +1.7 19,742 + GFF4443 0.42 -0.3 19,743 - GFF4443 0.42 -1.0 19,743 - GFF4443 0.42 -1.1 19,743 - GFF4443 0.42 +0.7 19,855 - GFF4443 0.48 +0.5 19,878 - GFF4443 0.50 +0.5 19,878 - GFF4443 0.50 +0.4 19,886 + GFF4443 0.50 -1.2 19,886 + GFF4443 0.50 -1.8 19,886 + GFF4443 0.50 +0.5 19,887 - GFF4443 0.50 -2.4 19,923 - GFF4443 0.52 -0.4 19,970 + GFF4443 0.55 -0.4 19,970 + GFF4443 0.55 +0.6 19,970 + GFF4443 0.55 +0.9 19,970 + GFF4443 0.55 +0.4 19,971 - GFF4443 0.55 +1.5 20,102 + GFF4443 0.62 +0.1 20,103 - GFF4443 0.62 +0.4 20,103 - GFF4443 0.62 -0.3 20,121 + GFF4443 0.63 +0.5 20,181 - GFF4443 0.66 +0.5 20,222 + GFF4443 0.68 +0.3 20,222 + GFF4443 0.68 -0.3 20,223 - GFF4443 0.69 +1.1 20,240 + GFF4443 0.69 +0.0 20,241 - GFF4443 0.70 +0.8 20,241 - GFF4443 0.70 +0.4 20,241 - GFF4443 0.70 +0.7 20,427 - GFF4443 0.80 +0.4 20,427 - GFF4443 0.80 +0.5 20,427 - GFF4443 0.80 +0.6 20,673 + -0.0 20,673 + -0.9 20,673 + +0.3 20,674 - -0.2 20,674 - +0.6 20,674 - -1.1 20,674 - -0.7 20,674 - -0.5 20,674 - -0.3 20,674 - -0.2 20,674 - -0.3 20,974 + GFF4444 0.17 -0.2 21,086 - GFF4444 0.27 -1.0 21,116 - GFF4444 0.29 -0.2 21,116 - GFF4444 0.29 +0.1 21,116 - GFF4444 0.29 +0.6 21,116 - GFF4444 0.29 +2.0 21,124 + GFF4444 0.30 +2.0 21,163 + GFF4444 0.34 +0.3 21,163 + GFF4444 0.34 +0.6 21,164 - GFF4444 0.34 +0.3 21,164 - GFF4444 0.34 +1.6 21,220 + GFF4444 0.39 -0.5 21,220 + GFF4444 0.39 +0.7 21,221 - GFF4444 0.39 -0.9 21,280 + GFF4444 0.44 +0.7 21,280 + GFF4444 0.44 -0.6 21,280 + GFF4444 0.44 -0.8 21,280 + GFF4444 0.44 -0.0 21,281 - GFF4444 0.44 -0.3 21,281 - GFF4444 0.44 -0.7 21,281 - GFF4444 0.44 +1.0 21,350 - GFF4444 0.51 +0.8 21,412 + GFF4444 0.56 +0.2 21,412 + GFF4444 0.56 -0.2 21,412 + GFF4444 0.56 +1.0 21,413 - GFF4444 0.56 -1.4 21,413 - GFF4444 0.56 -0.1 21,413 - GFF4444 0.56 +0.9 21,413 - GFF4444 0.56 +1.7 21,459 + GFF4444 0.60 +0.2 21,459 + GFF4444 0.60 -0.3 21,463 + GFF4444 0.61 +0.4 21,505 + GFF4444 0.65 +0.1 21,505 + GFF4444 0.65 +0.7 21,506 - GFF4444 0.65 +0.8 21,553 + GFF4444 0.69 -1.6 21,553 + GFF4444 0.69 +1.0 21,553 + GFF4444 0.69 +0.4 21,554 - GFF4444 0.69 +0.8 21,566 - GFF4444 0.70 -0.1
Or see this region's nucleotide sequence