Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4430 and GFF4431 are separated by 10 nucleotides GFF4431 and GFF4432 are separated by 10 nucleotides GFF4432 and GFF4433 are separated by 10 nucleotides GFF4433 and GFF4434 overlap by 4 nucleotides GFF4434 and GFF4435 overlap by 1 nucleotides
GFF4430 - Hydrogenase maturation factor HypD, at 9,163 to 10,287
GFF4430
GFF4431 - hypothetical protein, at 10,298 to 10,597
GFF4431
GFF4432 - hypothetical protein, at 10,608 to 10,784
GFF4432
GFF4433 - Hydrogenase transcriptional regulatory protein hupR1, at 10,795 to 12,270
GFF4433
GFF4434 - Urease accessory protein UreG, at 12,267 to 13,262
GFF4434
GFF4435 - Hydrogenase maturation factor HybF, at 13,262 to 13,603
GFF4435
Position (kb) 10
11
12
13 Strain fitness (log2 ratio) -2
-1
0
1
2 at 9.920 kb on + strand, within GFF4430 at 10.136 kb on + strand, within GFF4430 at 10.137 kb on - strand, within GFF4430 at 10.609 kb on + strand at 10.873 kb on + strand at 10.873 kb on + strand at 10.874 kb on - strand at 10.874 kb on - strand at 10.874 kb on - strand at 10.874 kb on - strand at 10.874 kb on - strand at 11.147 kb on + strand, within GFF4433 at 11.148 kb on - strand, within GFF4433 at 11.148 kb on - strand, within GFF4433 at 11.304 kb on - strand, within GFF4433 at 11.306 kb on + strand, within GFF4433 at 11.306 kb on + strand, within GFF4433 at 11.306 kb on + strand, within GFF4433 at 11.307 kb on - strand, within GFF4433 at 11.652 kb on - strand, within GFF4433 at 11.972 kb on + strand, within GFF4433 at 11.972 kb on + strand, within GFF4433 at 11.972 kb on + strand, within GFF4433 at 11.973 kb on - strand, within GFF4433 at 11.973 kb on - strand, within GFF4433 at 11.973 kb on - strand, within GFF4433 at 12.043 kb on + strand, within GFF4433 at 12.043 kb on + strand, within GFF4433 at 12.044 kb on - strand, within GFF4433 at 12.044 kb on - strand, within GFF4433 at 12.044 kb on - strand, within GFF4433 at 12.044 kb on - strand, within GFF4433 at 12.044 kb on - strand, within GFF4433 at 12.044 kb on - strand, within GFF4433 at 12.044 kb on - strand, within GFF4433 at 12.478 kb on + strand, within GFF4434 at 12.478 kb on + strand, within GFF4434 at 12.479 kb on - strand, within GFF4434 at 12.479 kb on - strand, within GFF4434 at 12.538 kb on + strand, within GFF4434 at 12.940 kb on + strand, within GFF4434 at 12.940 kb on + strand, within GFF4434 at 12.941 kb on - strand, within GFF4434 at 12.941 kb on - strand, within GFF4434 at 12.941 kb on - strand, within GFF4434 at 13.034 kb on - strand, within GFF4434 at 13.034 kb on - strand, within GFF4434 at 13.100 kb on + strand, within GFF4434 at 13.136 kb on + strand, within GFF4434 at 13.137 kb on - strand, within GFF4434 at 13.137 kb on - strand, within GFF4434
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 9,920 + GFF4430 0.67 +1.3 10,136 + GFF4430 0.86 +0.4 10,137 - GFF4430 0.87 -1.5 10,609 + +0.2 10,873 + -0.4 10,873 + -0.3 10,874 - -0.3 10,874 - +0.0 10,874 - -1.4 10,874 - -0.3 10,874 - -0.9 11,147 + GFF4433 0.24 -0.3 11,148 - GFF4433 0.24 -0.6 11,148 - GFF4433 0.24 -1.1 11,304 - GFF4433 0.34 +1.1 11,306 + GFF4433 0.35 -1.3 11,306 + GFF4433 0.35 +2.0 11,306 + GFF4433 0.35 -1.0 11,307 - GFF4433 0.35 -0.3 11,652 - GFF4433 0.58 -1.7 11,972 + GFF4433 0.80 +0.7 11,972 + GFF4433 0.80 +0.1 11,972 + GFF4433 0.80 -0.2 11,973 - GFF4433 0.80 -0.9 11,973 - GFF4433 0.80 -0.3 11,973 - GFF4433 0.80 -0.2 12,043 + GFF4433 0.85 +0.5 12,043 + GFF4433 0.85 -1.8 12,044 - GFF4433 0.85 +0.3 12,044 - GFF4433 0.85 -0.6 12,044 - GFF4433 0.85 -0.0 12,044 - GFF4433 0.85 -0.3 12,044 - GFF4433 0.85 -1.5 12,044 - GFF4433 0.85 -0.8 12,044 - GFF4433 0.85 +1.1 12,478 + GFF4434 0.21 +0.8 12,478 + GFF4434 0.21 -0.3 12,479 - GFF4434 0.21 +0.3 12,479 - GFF4434 0.21 +0.1 12,538 + GFF4434 0.27 -0.4 12,940 + GFF4434 0.68 -0.3 12,940 + GFF4434 0.68 +0.5 12,941 - GFF4434 0.68 -0.9 12,941 - GFF4434 0.68 +0.3 12,941 - GFF4434 0.68 +0.4 13,034 - GFF4434 0.77 +0.6 13,034 - GFF4434 0.77 -1.3 13,100 + GFF4434 0.84 -1.8 13,136 + GFF4434 0.87 -0.4 13,137 - GFF4434 0.87 -0.9 13,137 - GFF4434 0.87 +1.5
Or see this region's nucleotide sequence