Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4391 and GFF4392 are separated by 178 nucleotides GFF4392 and GFF4393 overlap by 4 nucleotides GFF4393 and GFF4394 are separated by 193 nucleotides
GFF4391 - Cyclohexadienyl dehydrogenase, at 191,352 to 192,293
GFF4391
GFF4392 - hypothetical protein, at 192,472 to 193,107
GFF4392
GFF4393 - hypothetical protein, at 193,104 to 194,144
GFF4393
GFF4394 - hypothetical protein, at 194,338 to 197,817
GFF4394
Position (kb) 193
194
195 Strain fitness (log2 ratio) -1
0
1
2 at 192.371 kb on + strand at 192.371 kb on + strand at 192.394 kb on - strand at 192.394 kb on - strand at 192.463 kb on + strand at 192.464 kb on - strand at 192.581 kb on - strand, within GFF4392 at 192.686 kb on - strand, within GFF4392 at 192.686 kb on - strand, within GFF4392 at 192.742 kb on + strand, within GFF4392 at 192.749 kb on - strand, within GFF4392 at 192.749 kb on - strand, within GFF4392 at 192.808 kb on + strand, within GFF4392 at 192.809 kb on - strand, within GFF4392 at 192.818 kb on - strand, within GFF4392 at 192.902 kb on - strand, within GFF4392 at 192.902 kb on - strand, within GFF4392 at 193.063 kb on + strand at 193.063 kb on + strand at 193.063 kb on + strand at 193.064 kb on - strand at 193.350 kb on + strand, within GFF4393 at 193.485 kb on + strand, within GFF4393 at 193.485 kb on + strand, within GFF4393 at 193.485 kb on + strand, within GFF4393 at 193.654 kb on - strand, within GFF4393 at 193.680 kb on + strand, within GFF4393 at 193.986 kb on + strand, within GFF4393 at 193.987 kb on - strand, within GFF4393 at 194.113 kb on - strand at 194.371 kb on + strand at 194.371 kb on + strand at 194.371 kb on + strand at 194.371 kb on + strand at 194.372 kb on - strand at 194.372 kb on - strand at 194.372 kb on - strand at 194.479 kb on + strand at 194.650 kb on + strand at 194.650 kb on + strand at 194.651 kb on - strand at 194.674 kb on + strand at 194.890 kb on + strand, within GFF4394 at 194.890 kb on + strand, within GFF4394 at 194.890 kb on + strand, within GFF4394 at 194.890 kb on + strand, within GFF4394
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 192,371 + +1.0 192,371 + +1.0 192,394 - -0.6 192,394 - -0.6 192,463 + +0.1 192,464 - +0.9 192,581 - GFF4392 0.17 -0.1 192,686 - GFF4392 0.34 +0.3 192,686 - GFF4392 0.34 +2.1 192,742 + GFF4392 0.42 +0.7 192,749 - GFF4392 0.44 -1.4 192,749 - GFF4392 0.44 +0.6 192,808 + GFF4392 0.53 -0.2 192,809 - GFF4392 0.53 +1.4 192,818 - GFF4392 0.54 -1.4 192,902 - GFF4392 0.68 +0.0 192,902 - GFF4392 0.68 +0.8 193,063 + +2.7 193,063 + +1.8 193,063 + -0.2 193,064 - +0.6 193,350 + GFF4393 0.24 -0.9 193,485 + GFF4393 0.37 -0.0 193,485 + GFF4393 0.37 -0.4 193,485 + GFF4393 0.37 -0.4 193,654 - GFF4393 0.53 -0.3 193,680 + GFF4393 0.55 -0.4 193,986 + GFF4393 0.85 +0.5 193,987 - GFF4393 0.85 -0.5 194,113 - -0.1 194,371 + +0.6 194,371 + +0.7 194,371 + -1.2 194,371 + +0.5 194,372 - +0.0 194,372 - +0.1 194,372 - -0.7 194,479 + -0.7 194,650 + +0.0 194,650 + -0.6 194,651 - -1.2 194,674 + +0.0 194,890 + GFF4394 0.16 +0.9 194,890 + GFF4394 0.16 -0.8 194,890 + GFF4394 0.16 -0.5 194,890 + GFF4394 0.16 +0.4
Or see this region's nucleotide sequence