Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4378 and GFF4379 are separated by 147 nucleotides GFF4379 and GFF4380 are separated by 20 nucleotides GFF4380 and GFF4381 overlap by 4 nucleotides
GFF4378 - p-hydroxyphenylacetate 3-hydroxylase, reductase component, at 168,305 to 168,817
GFF4378
GFF4379 - hypothetical protein, at 168,965 to 169,555
GFF4379
GFF4380 - Lipoprotein-releasing system ATP-binding protein LolD, at 169,576 to 170,343
GFF4380
GFF4381 - putative ABC transporter permease, at 170,340 to 171,485
GFF4381
Position (kb) 169
170
171 Strain fitness (log2 ratio) -2
-1
0
1
2 at 169.033 kb on + strand, within GFF4379 at 169.496 kb on + strand, within GFF4379 at 169.497 kb on - strand at 169.577 kb on + strand at 169.577 kb on + strand at 169.577 kb on + strand at 169.859 kb on + strand, within GFF4380 at 169.859 kb on + strand, within GFF4380 at 169.860 kb on - strand, within GFF4380 at 169.860 kb on - strand, within GFF4380 at 170.017 kb on + strand, within GFF4380 at 170.017 kb on + strand, within GFF4380 at 170.017 kb on + strand, within GFF4380 at 170.018 kb on - strand, within GFF4380 at 170.018 kb on - strand, within GFF4380 at 170.018 kb on - strand, within GFF4380 at 170.018 kb on - strand, within GFF4380 at 170.246 kb on + strand, within GFF4380 at 170.246 kb on + strand, within GFF4380 at 170.247 kb on - strand, within GFF4380 at 170.247 kb on - strand, within GFF4380 at 170.247 kb on - strand, within GFF4380 at 170.247 kb on - strand, within GFF4380 at 170.482 kb on + strand, within GFF4381 at 170.483 kb on - strand, within GFF4381 at 170.516 kb on - strand, within GFF4381 at 170.516 kb on - strand, within GFF4381 at 170.632 kb on + strand, within GFF4381 at 170.633 kb on - strand, within GFF4381 at 170.633 kb on - strand, within GFF4381 at 170.633 kb on - strand, within GFF4381 at 170.633 kb on - strand, within GFF4381 at 170.633 kb on - strand, within GFF4381 at 170.633 kb on - strand, within GFF4381 at 170.633 kb on - strand, within GFF4381 at 170.725 kb on - strand, within GFF4381 at 170.932 kb on + strand, within GFF4381 at 171.013 kb on + strand, within GFF4381 at 171.014 kb on - strand, within GFF4381 at 171.082 kb on + strand, within GFF4381 at 171.083 kb on - strand, within GFF4381 at 171.191 kb on + strand, within GFF4381 at 171.191 kb on + strand, within GFF4381 at 171.191 kb on + strand, within GFF4381 at 171.192 kb on - strand, within GFF4381 at 171.192 kb on - strand, within GFF4381 at 171.192 kb on - strand, within GFF4381 at 171.192 kb on - strand, within GFF4381 at 171.193 kb on + strand, within GFF4381 at 171.194 kb on - strand, within GFF4381 at 171.206 kb on - strand, within GFF4381
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 169,033 + GFF4379 0.12 -0.9 169,496 + GFF4379 0.90 +0.4 169,497 - -0.2 169,577 + -1.1 169,577 + -0.7 169,577 + +0.8 169,859 + GFF4380 0.37 -1.7 169,859 + GFF4380 0.37 +0.1 169,860 - GFF4380 0.37 -0.2 169,860 - GFF4380 0.37 -0.1 170,017 + GFF4380 0.57 +1.2 170,017 + GFF4380 0.57 -1.0 170,017 + GFF4380 0.57 +0.2 170,018 - GFF4380 0.58 +0.3 170,018 - GFF4380 0.58 -0.0 170,018 - GFF4380 0.58 +2.3 170,018 - GFF4380 0.58 +1.5 170,246 + GFF4380 0.87 +0.0 170,246 + GFF4380 0.87 +0.6 170,247 - GFF4380 0.87 +0.7 170,247 - GFF4380 0.87 +0.9 170,247 - GFF4380 0.87 -0.4 170,247 - GFF4380 0.87 +1.2 170,482 + GFF4381 0.12 +0.5 170,483 - GFF4381 0.12 +0.5 170,516 - GFF4381 0.15 +0.0 170,516 - GFF4381 0.15 -0.5 170,632 + GFF4381 0.25 -0.6 170,633 - GFF4381 0.26 +1.3 170,633 - GFF4381 0.26 +1.5 170,633 - GFF4381 0.26 +0.4 170,633 - GFF4381 0.26 -0.6 170,633 - GFF4381 0.26 -1.9 170,633 - GFF4381 0.26 +0.5 170,633 - GFF4381 0.26 +0.8 170,725 - GFF4381 0.34 +0.5 170,932 + GFF4381 0.52 +0.0 171,013 + GFF4381 0.59 -0.2 171,014 - GFF4381 0.59 +0.8 171,082 + GFF4381 0.65 +2.3 171,083 - GFF4381 0.65 -0.4 171,191 + GFF4381 0.74 -1.5 171,191 + GFF4381 0.74 +0.7 171,191 + GFF4381 0.74 +0.2 171,192 - GFF4381 0.74 -1.7 171,192 - GFF4381 0.74 -0.4 171,192 - GFF4381 0.74 +0.3 171,192 - GFF4381 0.74 +0.8 171,193 + GFF4381 0.74 +1.0 171,194 - GFF4381 0.75 +0.3 171,206 - GFF4381 0.76 -0.7
Or see this region's nucleotide sequence