Strain Fitness in Xanthobacter sp. DMC5 around GFF434

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF433 and GFF434 overlap by 1 nucleotidesGFF434 and GFF435 overlap by 4 nucleotidesGFF435 and GFF436 overlap by 4 nucleotides GFF433 - Lycopene beta-cyclase, at 455,982 to 457,139 GFF433 GFF434 - Phytoene desaturase (lycopene-forming), at 457,139 to 458,656 GFF434 GFF435 - 15-cis-phytoene synthase, at 458,653 to 459,594 GFF435 GFF436 - Zeaxanthin glucosyltransferase, at 459,591 to 460,856 GFF436 Position (kb) 457 458 459Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 456.207 kb on + strand, within GFF433at 456.232 kb on - strand, within GFF433at 456.232 kb on - strand, within GFF433at 456.528 kb on + strand, within GFF433at 456.528 kb on + strand, within GFF433at 456.528 kb on + strand, within GFF433at 456.529 kb on - strand, within GFF433at 456.529 kb on - strand, within GFF433at 456.574 kb on - strand, within GFF433at 456.574 kb on - strand, within GFF433at 456.574 kb on - strand, within GFF433at 456.577 kb on - strand, within GFF433at 456.577 kb on - strand, within GFF433at 456.793 kb on - strand, within GFF433at 456.966 kb on + strand, within GFF433at 456.988 kb on - strand, within GFF433at 457.021 kb on - strand, within GFF433at 457.062 kb on - strandat 457.062 kb on - strandat 457.137 kb on + strandat 457.138 kb on - strandat 457.280 kb on + strandat 457.280 kb on + strandat 457.280 kb on + strandat 457.281 kb on - strandat 457.281 kb on - strandat 457.281 kb on - strandat 457.281 kb on - strandat 457.281 kb on - strandat 457.281 kb on - strandat 457.281 kb on - strandat 457.358 kb on + strand, within GFF434at 457.358 kb on + strand, within GFF434at 457.358 kb on + strand, within GFF434at 457.358 kb on + strand, within GFF434at 457.358 kb on + strand, within GFF434at 457.358 kb on + strand, within GFF434at 457.358 kb on + strand, within GFF434at 457.359 kb on - strand, within GFF434at 457.454 kb on + strand, within GFF434at 457.454 kb on + strand, within GFF434at 457.455 kb on - strand, within GFF434at 457.521 kb on - strand, within GFF434at 457.565 kb on + strand, within GFF434at 457.565 kb on + strand, within GFF434at 457.566 kb on - strand, within GFF434at 457.566 kb on - strand, within GFF434at 457.566 kb on - strand, within GFF434at 457.658 kb on + strand, within GFF434at 457.680 kb on + strand, within GFF434at 457.681 kb on - strand, within GFF434at 457.760 kb on + strand, within GFF434at 457.761 kb on - strand, within GFF434at 457.761 kb on - strand, within GFF434at 457.994 kb on + strand, within GFF434at 457.994 kb on + strand, within GFF434at 457.994 kb on + strand, within GFF434at 457.994 kb on + strand, within GFF434at 457.995 kb on - strand, within GFF434at 457.995 kb on - strand, within GFF434at 458.084 kb on + strand, within GFF434at 458.207 kb on + strand, within GFF434at 458.208 kb on - strand, within GFF434at 458.208 kb on - strand, within GFF434at 458.208 kb on - strand, within GFF434at 458.267 kb on + strand, within GFF434at 458.267 kb on + strand, within GFF434at 458.268 kb on - strand, within GFF434at 458.782 kb on + strand, within GFF435at 458.782 kb on + strand, within GFF435at 458.783 kb on - strand, within GFF435at 459.034 kb on + strand, within GFF435at 459.062 kb on - strand, within GFF435at 459.067 kb on + strand, within GFF435at 459.068 kb on - strand, within GFF435at 459.068 kb on - strand, within GFF435at 459.068 kb on - strand, within GFF435at 459.220 kb on + strand, within GFF435at 459.220 kb on + strand, within GFF435at 459.220 kb on + strand, within GFF435at 459.220 kb on + strand, within GFF435at 459.221 kb on - strand, within GFF435at 459.221 kb on - strand, within GFF435at 459.221 kb on - strand, within GFF435at 459.221 kb on - strand, within GFF435at 459.254 kb on + strand, within GFF435at 459.338 kb on - strand, within GFF435at 459.633 kb on + strandat 459.633 kb on + strandat 459.634 kb on - strandat 459.634 kb on - strandat 459.634 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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456,207 + GFF433 0.19 +0.4
456,232 - GFF433 0.22 -3.2
456,232 - GFF433 0.22 -0.9
456,528 + GFF433 0.47 +0.5
456,528 + GFF433 0.47 +1.3
456,528 + GFF433 0.47 -0.2
456,529 - GFF433 0.47 -0.1
456,529 - GFF433 0.47 -0.6
456,574 - GFF433 0.51 -0.0
456,574 - GFF433 0.51 -0.5
456,574 - GFF433 0.51 -0.6
456,577 - GFF433 0.51 +0.5
456,577 - GFF433 0.51 -0.2
456,793 - GFF433 0.70 -0.0
456,966 + GFF433 0.85 +2.1
456,988 - GFF433 0.87 +0.8
457,021 - GFF433 0.90 -0.3
457,062 - -0.9
457,062 - -0.2
457,137 + +0.9
457,138 - -0.5
457,280 + -1.6
457,280 + -1.2
457,280 + +0.0
457,281 - +0.2
457,281 - -0.9
457,281 - -0.5
457,281 - +0.1
457,281 - -0.3
457,281 - +1.1
457,281 - -0.5
457,358 + GFF434 0.14 +0.5
457,358 + GFF434 0.14 -0.7
457,358 + GFF434 0.14 -0.3
457,358 + GFF434 0.14 +0.3
457,358 + GFF434 0.14 -0.6
457,358 + GFF434 0.14 +0.3
457,358 + GFF434 0.14 -0.2
457,359 - GFF434 0.14 -0.3
457,454 + GFF434 0.21 +1.5
457,454 + GFF434 0.21 +0.1
457,455 - GFF434 0.21 +0.1
457,521 - GFF434 0.25 +0.0
457,565 + GFF434 0.28 -0.1
457,565 + GFF434 0.28 -0.9
457,566 - GFF434 0.28 +0.4
457,566 - GFF434 0.28 -0.9
457,566 - GFF434 0.28 -0.4
457,658 + GFF434 0.34 +0.8
457,680 + GFF434 0.36 +0.3
457,681 - GFF434 0.36 -1.2
457,760 + GFF434 0.41 -0.7
457,761 - GFF434 0.41 -0.5
457,761 - GFF434 0.41 -0.8
457,994 + GFF434 0.56 +0.3
457,994 + GFF434 0.56 -1.7
457,994 + GFF434 0.56 -0.4
457,994 + GFF434 0.56 -1.0
457,995 - GFF434 0.56 +0.8
457,995 - GFF434 0.56 +0.1
458,084 + GFF434 0.62 +0.1
458,207 + GFF434 0.70 +0.4
458,208 - GFF434 0.70 +0.1
458,208 - GFF434 0.70 +0.7
458,208 - GFF434 0.70 +0.5
458,267 + GFF434 0.74 +0.0
458,267 + GFF434 0.74 -0.8
458,268 - GFF434 0.74 +2.1
458,782 + GFF435 0.14 -0.2
458,782 + GFF435 0.14 -0.2
458,783 - GFF435 0.14 +0.5
459,034 + GFF435 0.40 +0.5
459,062 - GFF435 0.43 +0.4
459,067 + GFF435 0.44 +0.5
459,068 - GFF435 0.44 +0.1
459,068 - GFF435 0.44 -0.5
459,068 - GFF435 0.44 -0.8
459,220 + GFF435 0.60 +0.4
459,220 + GFF435 0.60 -2.2
459,220 + GFF435 0.60 -0.2
459,220 + GFF435 0.60 +1.1
459,221 - GFF435 0.60 +0.1
459,221 - GFF435 0.60 -0.9
459,221 - GFF435 0.60 +0.6
459,221 - GFF435 0.60 -0.0
459,254 + GFF435 0.64 -0.9
459,338 - GFF435 0.73 -0.0
459,633 + +0.2
459,633 + +1.4
459,634 - -0.1
459,634 - +0.9
459,634 - -0.7

Or see this region's nucleotide sequence