Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4307 and GFF4308 are separated by 202 nucleotides GFF4308 and GFF4309 are separated by 6 nucleotides GFF4309 and GFF4310 are separated by 150 nucleotides
GFF4307 - hypothetical protein, at 87,729 to 88,640
GFF4307
GFF4308 - Molybdopterin adenylyltransferase, at 88,843 to 89,376
GFF4308
GFF4309 - Ferrous-iron efflux pump FieF, at 89,383 to 90,273
GFF4309
GFF4310 - hypothetical protein, at 90,424 to 91,188
GFF4310
Position (kb) 89
90
91 Strain fitness (log2 ratio) -1
0
1
2 at 88.576 kb on + strand at 88.576 kb on + strand at 88.577 kb on - strand at 88.577 kb on - strand at 88.577 kb on - strand at 88.630 kb on + strand at 88.704 kb on - strand at 88.789 kb on + strand at 88.789 kb on + strand at 88.789 kb on + strand at 88.790 kb on - strand at 88.900 kb on + strand, within GFF4308 at 88.900 kb on + strand, within GFF4308 at 88.900 kb on + strand, within GFF4308 at 88.901 kb on - strand, within GFF4308 at 88.901 kb on - strand, within GFF4308 at 88.901 kb on - strand, within GFF4308 at 88.901 kb on - strand, within GFF4308 at 89.297 kb on - strand, within GFF4308 at 89.297 kb on - strand, within GFF4308 at 89.384 kb on + strand at 89.385 kb on - strand at 89.385 kb on - strand at 89.979 kb on - strand, within GFF4309 at 89.981 kb on + strand, within GFF4309 at 89.981 kb on + strand, within GFF4309 at 89.981 kb on + strand, within GFF4309 at 89.982 kb on - strand, within GFF4309 at 89.982 kb on - strand, within GFF4309 at 89.982 kb on - strand, within GFF4309 at 89.982 kb on - strand, within GFF4309 at 90.048 kb on - strand, within GFF4309 at 90.342 kb on - strand at 90.342 kb on - strand at 90.402 kb on + strand at 90.402 kb on + strand at 90.403 kb on - strand at 90.414 kb on - strand at 90.426 kb on - strand at 90.918 kb on - strand, within GFF4310 at 90.959 kb on + strand, within GFF4310 at 90.960 kb on - strand, within GFF4310 at 90.960 kb on - strand, within GFF4310
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 88,576 + +0.2 88,576 + -0.8 88,577 - -0.7 88,577 - +0.9 88,577 - -0.1 88,630 + -0.1 88,704 - +0.7 88,789 + +0.2 88,789 + +0.6 88,789 + -1.2 88,790 - -0.4 88,900 + GFF4308 0.11 +1.5 88,900 + GFF4308 0.11 +0.6 88,900 + GFF4308 0.11 +0.6 88,901 - GFF4308 0.11 +1.8 88,901 - GFF4308 0.11 +2.1 88,901 - GFF4308 0.11 +0.1 88,901 - GFF4308 0.11 +0.3 89,297 - GFF4308 0.85 +0.2 89,297 - GFF4308 0.85 +1.1 89,384 + +0.2 89,385 - -0.2 89,385 - -0.1 89,979 - GFF4309 0.67 +1.0 89,981 + GFF4309 0.67 +0.8 89,981 + GFF4309 0.67 +1.0 89,981 + GFF4309 0.67 +0.5 89,982 - GFF4309 0.67 -1.3 89,982 - GFF4309 0.67 -0.1 89,982 - GFF4309 0.67 -0.8 89,982 - GFF4309 0.67 -0.2 90,048 - GFF4309 0.75 -0.7 90,342 - +0.6 90,342 - +0.3 90,402 + +1.4 90,402 + +0.7 90,403 - -0.9 90,414 - +0.8 90,426 - -1.0 90,918 - GFF4310 0.65 -0.5 90,959 + GFF4310 0.70 +0.3 90,960 - GFF4310 0.70 -0.4 90,960 - GFF4310 0.70 +0.2
Or see this region's nucleotide sequence