Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4239 and GFF4240 are separated by 90 nucleotides GFF4240 and GFF4241 are separated by 140 nucleotides GFF4241 and GFF4242 are separated by 222 nucleotides GFF4242 and GFF4243 overlap by 4 nucleotides
GFF4239 - hypothetical protein, at 11,708 to 13,072
GFF4239
GFF4240 - hypothetical protein, at 13,163 to 13,477
GFF4240
GFF4241 - Peptide methionine sulfoxide reductase MsrA, at 13,618 to 14,274
GFF4241
GFF4242 - Dihydropteroate synthase, at 14,497 to 15,261
GFF4242
GFF4243 - Bifunctional folate synthesis protein, at 15,258 to 15,755
GFF4243
Position (kb) 13
14
15 Strain fitness (log2 ratio) -2
-1
0
1 at 12.743 kb on + strand, within GFF4239 at 12.962 kb on + strand at 13.086 kb on - strand at 13.116 kb on - strand at 13.516 kb on + strand at 13.520 kb on + strand at 13.521 kb on - strand at 13.521 kb on - strand at 13.521 kb on - strand at 13.564 kb on + strand at 13.564 kb on + strand at 13.565 kb on - strand at 13.708 kb on + strand, within GFF4241 at 13.708 kb on + strand, within GFF4241 at 13.709 kb on - strand, within GFF4241 at 13.841 kb on - strand, within GFF4241 at 13.870 kb on + strand, within GFF4241 at 13.870 kb on + strand, within GFF4241 at 13.871 kb on - strand, within GFF4241 at 13.871 kb on - strand, within GFF4241 at 13.871 kb on - strand, within GFF4241 at 13.871 kb on - strand, within GFF4241 at 13.946 kb on - strand, within GFF4241 at 14.041 kb on + strand, within GFF4241 at 14.041 kb on + strand, within GFF4241 at 14.042 kb on - strand, within GFF4241 at 14.093 kb on - strand, within GFF4241 at 14.093 kb on - strand, within GFF4241 at 14.162 kb on - strand, within GFF4241 at 14.174 kb on + strand, within GFF4241 at 14.272 kb on + strand at 14.273 kb on - strand at 15.270 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 12,743 + GFF4239 0.76 -0.7 12,962 + -0.4 13,086 - +0.5 13,116 - +1.5 13,516 + -0.3 13,520 + -1.4 13,521 - -1.0 13,521 - -0.3 13,521 - -0.5 13,564 + -0.2 13,564 + -0.2 13,565 - +0.5 13,708 + GFF4241 0.14 +0.9 13,708 + GFF4241 0.14 +0.3 13,709 - GFF4241 0.14 -0.5 13,841 - GFF4241 0.34 +0.2 13,870 + GFF4241 0.38 +0.6 13,870 + GFF4241 0.38 -0.6 13,871 - GFF4241 0.39 -2.6 13,871 - GFF4241 0.39 +0.9 13,871 - GFF4241 0.39 +0.5 13,871 - GFF4241 0.39 -0.1 13,946 - GFF4241 0.50 +0.1 14,041 + GFF4241 0.64 -0.5 14,041 + GFF4241 0.64 +0.2 14,042 - GFF4241 0.65 -1.1 14,093 - GFF4241 0.72 -0.7 14,093 - GFF4241 0.72 +0.3 14,162 - GFF4241 0.83 -0.7 14,174 + GFF4241 0.85 -0.5 14,272 + -0.6 14,273 - +0.6 15,270 + +1.1
Or see this region's nucleotide sequence