Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4201 and GFF4202 are separated by 568 nucleotides GFF4202 and GFF4203 are separated by 120 nucleotides GFF4203 and GFF4204 overlap by 4 nucleotides
GFF4201 - 3-oxoadipate enol-lactonase 2, at 220,438 to 221,235
GFF4201
GFF4202 - hypothetical protein, at 221,804 to 222,010
GFF4202
GFF4203 - Penicillin-binding protein 1C, at 222,131 to 224,215
GFF4203
GFF4204 - Alpha-2-macroglobulin, at 224,212 to 229,542
GFF4204
Position (kb) 222
223
224
225 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 221.752 kb on + strand at 221.775 kb on + strand at 221.924 kb on + strand, within GFF4202 at 222.056 kb on + strand at 222.057 kb on - strand at 222.133 kb on - strand at 222.618 kb on + strand, within GFF4203 at 222.624 kb on + strand, within GFF4203 at 222.624 kb on + strand, within GFF4203 at 222.624 kb on + strand, within GFF4203 at 222.624 kb on + strand, within GFF4203 at 222.624 kb on + strand, within GFF4203 at 222.624 kb on + strand, within GFF4203 at 222.625 kb on - strand, within GFF4203 at 222.625 kb on - strand, within GFF4203 at 222.625 kb on - strand, within GFF4203 at 222.625 kb on - strand, within GFF4203 at 222.705 kb on + strand, within GFF4203 at 222.816 kb on + strand, within GFF4203 at 222.816 kb on + strand, within GFF4203 at 222.816 kb on + strand, within GFF4203 at 223.207 kb on - strand, within GFF4203 at 223.224 kb on + strand, within GFF4203 at 223.224 kb on + strand, within GFF4203 at 223.224 kb on + strand, within GFF4203 at 223.225 kb on - strand, within GFF4203 at 223.225 kb on - strand, within GFF4203 at 223.225 kb on - strand, within GFF4203 at 223.695 kb on + strand, within GFF4203 at 223.903 kb on + strand, within GFF4203 at 223.904 kb on - strand, within GFF4203 at 223.904 kb on - strand, within GFF4203 at 223.904 kb on - strand, within GFF4203 at 223.904 kb on - strand, within GFF4203 at 223.929 kb on + strand, within GFF4203 at 223.930 kb on - strand, within GFF4203 at 223.930 kb on - strand, within GFF4203 at 224.273 kb on + strand at 224.274 kb on - strand at 224.274 kb on - strand at 224.307 kb on - strand at 224.307 kb on - strand at 224.624 kb on + strand at 225.171 kb on - strand, within GFF4204 at 225.215 kb on + strand, within GFF4204 at 225.215 kb on + strand, within GFF4204
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 221,752 + +0.8 221,775 + +0.1 221,924 + GFF4202 0.58 -0.4 222,056 + -0.5 222,057 - -0.5 222,133 - +1.0 222,618 + GFF4203 0.23 +3.4 222,624 + GFF4203 0.24 +3.3 222,624 + GFF4203 0.24 +3.9 222,624 + GFF4203 0.24 +3.3 222,624 + GFF4203 0.24 +3.9 222,624 + GFF4203 0.24 +3.4 222,624 + GFF4203 0.24 +3.5 222,625 - GFF4203 0.24 +4.1 222,625 - GFF4203 0.24 +3.2 222,625 - GFF4203 0.24 +3.5 222,625 - GFF4203 0.24 +3.9 222,705 + GFF4203 0.28 +3.3 222,816 + GFF4203 0.33 +3.9 222,816 + GFF4203 0.33 +3.9 222,816 + GFF4203 0.33 +3.5 223,207 - GFF4203 0.52 +3.3 223,224 + GFF4203 0.52 +3.9 223,224 + GFF4203 0.52 +3.2 223,224 + GFF4203 0.52 +3.4 223,225 - GFF4203 0.52 +3.2 223,225 - GFF4203 0.52 +3.7 223,225 - GFF4203 0.52 +3.3 223,695 + GFF4203 0.75 +3.9 223,903 + GFF4203 0.85 +3.8 223,904 - GFF4203 0.85 +3.5 223,904 - GFF4203 0.85 +3.9 223,904 - GFF4203 0.85 +3.9 223,904 - GFF4203 0.85 +3.4 223,929 + GFF4203 0.86 +3.5 223,930 - GFF4203 0.86 +4.2 223,930 - GFF4203 0.86 +3.7 224,273 + +3.7 224,274 - +3.9 224,274 - +3.4 224,307 - +2.4 224,307 - +3.6 224,624 + +4.4 225,171 - GFF4204 0.18 +3.5 225,215 + GFF4204 0.19 +3.8 225,215 + GFF4204 0.19 +3.7
Or see this region's nucleotide sequence