Strain Fitness in Xanthobacter sp. DMC5 around GFF4090

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4089 and GFF4090 are separated by 23 nucleotidesGFF4090 and GFF4091 are separated by 19 nucleotidesGFF4091 and GFF4092 are separated by 99 nucleotides GFF4089 - Riboflavin transporter RibZ, at 81,507 to 82,949 GFF4089 GFF4090 - Vibriobactin utilization protein ViuB, at 82,973 to 83,746 GFF4090 GFF4091 - hypothetical protein, at 83,766 to 84,599 GFF4091 GFF4092 - hypothetical protein, at 84,699 to 85,715 GFF4092 Position (kb) 82 83 84Strain fitness (log2 ratio) -2 -1 0 1 2at 82.101 kb on + strand, within GFF4089at 82.101 kb on + strand, within GFF4089at 82.389 kb on + strand, within GFF4089at 82.389 kb on + strand, within GFF4089at 82.390 kb on - strand, within GFF4089at 82.635 kb on + strand, within GFF4089at 82.635 kb on + strand, within GFF4089at 82.635 kb on + strand, within GFF4089at 82.636 kb on - strand, within GFF4089at 82.636 kb on - strand, within GFF4089at 82.636 kb on - strand, within GFF4089at 82.636 kb on - strand, within GFF4089at 82.636 kb on - strand, within GFF4089at 83.195 kb on + strand, within GFF4090at 83.235 kb on - strand, within GFF4090at 83.956 kb on + strand, within GFF4091at 83.956 kb on + strand, within GFF4091at 83.956 kb on + strand, within GFF4091at 83.956 kb on + strand, within GFF4091at 83.956 kb on + strand, within GFF4091at 83.956 kb on + strand, within GFF4091at 83.956 kb on + strand, within GFF4091at 83.956 kb on + strand, within GFF4091at 83.957 kb on - strand, within GFF4091at 83.957 kb on - strand, within GFF4091at 83.957 kb on - strand, within GFF4091at 83.957 kb on - strand, within GFF4091at 83.957 kb on - strand, within GFF4091at 84.043 kb on + strand, within GFF4091at 84.043 kb on + strand, within GFF4091at 84.044 kb on - strand, within GFF4091at 84.044 kb on - strand, within GFF4091at 84.044 kb on - strand, within GFF4091at 84.073 kb on + strand, within GFF4091at 84.073 kb on + strand, within GFF4091at 84.254 kb on + strand, within GFF4091at 84.425 kb on - strand, within GFF4091at 84.469 kb on + strand, within GFF4091at 84.470 kb on - strand, within GFF4091at 84.633 kb on + strandat 84.634 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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82,101 + GFF4089 0.41 -0.4
82,101 + GFF4089 0.41 +1.2
82,389 + GFF4089 0.61 +0.2
82,389 + GFF4089 0.61 -1.5
82,390 - GFF4089 0.61 +0.8
82,635 + GFF4089 0.78 +2.1
82,635 + GFF4089 0.78 +0.5
82,635 + GFF4089 0.78 -0.6
82,636 - GFF4089 0.78 -0.9
82,636 - GFF4089 0.78 -0.7
82,636 - GFF4089 0.78 +0.8
82,636 - GFF4089 0.78 -1.1
82,636 - GFF4089 0.78 +0.9
83,195 + GFF4090 0.29 +0.5
83,235 - GFF4090 0.34 -0.0
83,956 + GFF4091 0.23 +0.4
83,956 + GFF4091 0.23 -0.2
83,956 + GFF4091 0.23 -2.5
83,956 + GFF4091 0.23 +0.8
83,956 + GFF4091 0.23 +0.1
83,956 + GFF4091 0.23 +2.4
83,956 + GFF4091 0.23 +0.5
83,956 + GFF4091 0.23 -1.1
83,957 - GFF4091 0.23 +1.2
83,957 - GFF4091 0.23 +0.7
83,957 - GFF4091 0.23 +0.3
83,957 - GFF4091 0.23 -1.0
83,957 - GFF4091 0.23 +0.1
84,043 + GFF4091 0.33 +1.1
84,043 + GFF4091 0.33 -1.2
84,044 - GFF4091 0.33 -0.2
84,044 - GFF4091 0.33 +0.4
84,044 - GFF4091 0.33 +0.9
84,073 + GFF4091 0.37 +0.6
84,073 + GFF4091 0.37 -0.2
84,254 + GFF4091 0.59 +0.3
84,425 - GFF4091 0.79 -0.0
84,469 + GFF4091 0.84 +0.1
84,470 - GFF4091 0.84 +1.1
84,633 + -0.1
84,634 - -0.7

Or see this region's nucleotide sequence