Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4067 and GFF4068 are separated by 2 nucleotides GFF4068 and GFF4069 overlap by 4 nucleotides GFF4069 and GFF4070 overlap by 4 nucleotides GFF4070 and GFF4071 are separated by 90 nucleotides
GFF4067 - hypothetical protein, at 61,236 to 61,967
GFF4067
GFF4068 - hypothetical protein, at 61,970 to 62,350
GFF4068
GFF4069 - hypothetical protein, at 62,347 to 62,691
GFF4069
GFF4070 - Fumarate reductase iron-sulfur subunit, at 62,688 to 63,464
GFF4070
GFF4071 - hypothetical protein, at 63,555 to 64,577
GFF4071
Position (kb) 62
63
64 Strain fitness (log2 ratio) -2
-1
0
1
2 at 62.372 kb on + strand at 62.505 kb on + strand, within GFF4069 at 62.531 kb on + strand, within GFF4069 at 62.531 kb on + strand, within GFF4069 at 62.675 kb on + strand at 62.675 kb on + strand at 62.675 kb on + strand at 62.675 kb on + strand at 62.675 kb on + strand at 62.675 kb on + strand at 62.675 kb on + strand at 62.676 kb on - strand at 62.764 kb on + strand at 62.764 kb on + strand at 62.765 kb on - strand at 62.929 kb on + strand, within GFF4070 at 62.929 kb on + strand, within GFF4070 at 62.930 kb on - strand, within GFF4070 at 62.930 kb on - strand, within GFF4070 at 62.966 kb on - strand, within GFF4070 at 63.173 kb on + strand, within GFF4070 at 63.174 kb on - strand, within GFF4070 at 63.546 kb on - strand at 63.552 kb on + strand at 63.552 kb on + strand at 63.552 kb on + strand at 63.552 kb on + strand at 63.553 kb on - strand at 63.643 kb on + strand at 63.643 kb on + strand at 63.643 kb on + strand at 63.643 kb on + strand at 63.644 kb on - strand at 63.644 kb on - strand at 63.644 kb on - strand at 63.644 kb on - strand at 63.644 kb on - strand at 63.644 kb on - strand at 63.653 kb on - strand at 63.653 kb on - strand at 63.900 kb on + strand, within GFF4071 at 63.901 kb on - strand, within GFF4071 at 63.901 kb on - strand, within GFF4071 at 63.907 kb on + strand, within GFF4071 at 63.907 kb on + strand, within GFF4071 at 63.907 kb on + strand, within GFF4071 at 63.907 kb on + strand, within GFF4071 at 63.907 kb on + strand, within GFF4071 at 63.907 kb on + strand, within GFF4071 at 63.907 kb on + strand, within GFF4071 at 63.908 kb on - strand, within GFF4071 at 63.908 kb on - strand, within GFF4071 at 63.908 kb on - strand, within GFF4071 at 64.204 kb on + strand, within GFF4071 at 64.204 kb on + strand, within GFF4071 at 64.444 kb on + strand, within GFF4071 at 64.444 kb on + strand, within GFF4071 at 64.444 kb on + strand, within GFF4071 at 64.445 kb on - strand, within GFF4071 at 64.445 kb on - strand, within GFF4071 at 64.445 kb on - strand, within GFF4071 at 64.445 kb on - strand, within GFF4071
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 62,372 + -0.9 62,505 + GFF4069 0.46 -0.1 62,531 + GFF4069 0.53 -0.6 62,531 + GFF4069 0.53 -1.0 62,675 + +1.2 62,675 + -0.8 62,675 + +0.2 62,675 + +0.7 62,675 + +1.0 62,675 + -2.0 62,675 + +1.9 62,676 - -1.4 62,764 + -0.4 62,764 + -0.4 62,765 - +0.8 62,929 + GFF4070 0.31 -0.4 62,929 + GFF4070 0.31 -1.5 62,930 - GFF4070 0.31 -0.1 62,930 - GFF4070 0.31 -0.0 62,966 - GFF4070 0.36 -0.8 63,173 + GFF4070 0.62 -0.1 63,174 - GFF4070 0.63 -0.8 63,546 - -0.1 63,552 + -0.9 63,552 + -0.4 63,552 + -0.8 63,552 + -0.1 63,553 - -0.4 63,643 + -0.6 63,643 + -1.7 63,643 + +0.1 63,643 + -0.9 63,644 - +0.2 63,644 - -0.5 63,644 - +1.0 63,644 - -0.2 63,644 - -1.5 63,644 - +1.2 63,653 - +0.2 63,653 - +0.1 63,900 + GFF4071 0.34 +0.7 63,901 - GFF4071 0.34 -1.0 63,901 - GFF4071 0.34 -0.6 63,907 + GFF4071 0.34 -1.1 63,907 + GFF4071 0.34 -1.0 63,907 + GFF4071 0.34 -0.2 63,907 + GFF4071 0.34 -1.0 63,907 + GFF4071 0.34 +0.4 63,907 + GFF4071 0.34 -1.3 63,907 + GFF4071 0.34 -1.1 63,908 - GFF4071 0.35 -0.6 63,908 - GFF4071 0.35 +1.0 63,908 - GFF4071 0.35 -0.1 64,204 + GFF4071 0.63 -1.2 64,204 + GFF4071 0.63 -0.6 64,444 + GFF4071 0.87 +0.6 64,444 + GFF4071 0.87 -0.6 64,444 + GFF4071 0.87 -0.3 64,445 - GFF4071 0.87 +1.3 64,445 - GFF4071 0.87 -0.4 64,445 - GFF4071 0.87 -0.4 64,445 - GFF4071 0.87 -0.6
Or see this region's nucleotide sequence