Strain Fitness in Xanthobacter sp. DMC5 around GFF4025

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4023 and GFF4024 overlap by 4 nucleotidesGFF4024 and GFF4025 overlap by 4 nucleotidesGFF4025 and GFF4026 overlap by 11 nucleotidesGFF4026 and GFF4027 are separated by 113 nucleotides GFF4023 - High-affinity branched-chain amino acid transport system permease protein LivH, at 7,358 to 8,209 GFF4023 GFF4024 - hypothetical protein, at 8,206 to 9,195 GFF4024 GFF4025 - Lipopolysaccharide export system ATP-binding protein LptB, at 9,192 to 9,941 GFF4025 GFF4026 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 9,931 to 10,653 GFF4026 GFF4027 - hypothetical protein, at 10,767 to 11,462 GFF4027 Position (kb) 9 10Strain fitness (log2 ratio) -1 0 1at 8.287 kb on + strandat 8.287 kb on + strandat 8.287 kb on + strandat 8.287 kb on + strandat 8.287 kb on + strandat 8.288 kb on - strandat 8.288 kb on - strandat 8.317 kb on + strand, within GFF4024at 8.317 kb on + strand, within GFF4024at 8.408 kb on - strand, within GFF4024at 8.590 kb on + strand, within GFF4024at 8.591 kb on - strand, within GFF4024at 8.591 kb on - strand, within GFF4024at 8.668 kb on + strand, within GFF4024at 8.669 kb on - strand, within GFF4024at 8.669 kb on - strand, within GFF4024at 8.672 kb on - strand, within GFF4024at 8.791 kb on + strand, within GFF4024at 8.792 kb on - strand, within GFF4024at 8.821 kb on + strand, within GFF4024at 8.821 kb on + strand, within GFF4024at 8.822 kb on - strand, within GFF4024at 8.822 kb on - strand, within GFF4024at 8.822 kb on - strand, within GFF4024at 8.863 kb on + strand, within GFF4024at 8.864 kb on - strand, within GFF4024at 8.864 kb on - strand, within GFF4024at 8.864 kb on - strand, within GFF4024at 8.864 kb on - strand, within GFF4024at 8.930 kb on + strand, within GFF4024at 8.930 kb on + strand, within GFF4024at 8.930 kb on + strand, within GFF4024at 8.931 kb on - strand, within GFF4024at 9.019 kb on + strand, within GFF4024at 9.020 kb on - strand, within GFF4024at 9.021 kb on + strand, within GFF4024at 9.021 kb on + strand, within GFF4024at 9.363 kb on - strand, within GFF4025at 9.648 kb on + strand, within GFF4025at 9.648 kb on + strand, within GFF4025at 9.648 kb on + strand, within GFF4025at 9.649 kb on - strand, within GFF4025at 9.861 kb on + strand, within GFF4025at 9.862 kb on - strand, within GFF4025at 9.927 kb on + strandat 9.927 kb on + strandat 9.927 kb on + strandat 9.928 kb on - strandat 9.928 kb on - strandat 9.928 kb on - strandat 9.976 kb on + strandat 9.976 kb on + strandat 9.976 kb on + strandat 9.976 kb on + strandat 9.976 kb on + strandat 9.976 kb on + strandat 9.977 kb on - strandat 10.298 kb on - strand, within GFF4026at 10.298 kb on - strand, within GFF4026at 10.651 kb on + strandat 10.652 kb on - strandat 10.741 kb on - strandat 10.938 kb on + strand, within GFF4027at 10.939 kb on - strand, within GFF4027

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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8,287 + -1.6
8,287 + -0.6
8,287 + -1.3
8,287 + +0.6
8,287 + -1.2
8,288 - +0.9
8,288 - -1.7
8,317 + GFF4024 0.11 -0.9
8,317 + GFF4024 0.11 -0.5
8,408 - GFF4024 0.20 -0.2
8,590 + GFF4024 0.39 +1.2
8,591 - GFF4024 0.39 -0.2
8,591 - GFF4024 0.39 +1.2
8,668 + GFF4024 0.47 -1.3
8,669 - GFF4024 0.47 +0.5
8,669 - GFF4024 0.47 -0.3
8,672 - GFF4024 0.47 -0.1
8,791 + GFF4024 0.59 +0.4
8,792 - GFF4024 0.59 +0.3
8,821 + GFF4024 0.62 -0.9
8,821 + GFF4024 0.62 +1.1
8,822 - GFF4024 0.62 +0.2
8,822 - GFF4024 0.62 +0.1
8,822 - GFF4024 0.62 +0.8
8,863 + GFF4024 0.66 +0.4
8,864 - GFF4024 0.66 +0.9
8,864 - GFF4024 0.66 +0.3
8,864 - GFF4024 0.66 +0.7
8,864 - GFF4024 0.66 +0.8
8,930 + GFF4024 0.73 +0.2
8,930 + GFF4024 0.73 -0.5
8,930 + GFF4024 0.73 -0.4
8,931 - GFF4024 0.73 +0.9
9,019 + GFF4024 0.82 -0.6
9,020 - GFF4024 0.82 -0.8
9,021 + GFF4024 0.82 +0.5
9,021 + GFF4024 0.82 +0.3
9,363 - GFF4025 0.23 -0.2
9,648 + GFF4025 0.61 +0.4
9,648 + GFF4025 0.61 +0.2
9,648 + GFF4025 0.61 -0.8
9,649 - GFF4025 0.61 +0.2
9,861 + GFF4025 0.89 +0.5
9,862 - GFF4025 0.89 -0.9
9,927 + +1.4
9,927 + +1.1
9,927 + +0.3
9,928 - +0.2
9,928 - +0.1
9,928 - -0.4
9,976 + +0.3
9,976 + -0.6
9,976 + +1.0
9,976 + -1.2
9,976 + -0.3
9,976 + +0.4
9,977 - -0.2
10,298 - GFF4026 0.51 +0.5
10,298 - GFF4026 0.51 +0.5
10,651 + +0.0
10,652 - -0.9
10,741 - +0.1
10,938 + GFF4027 0.25 +1.2
10,939 - GFF4027 0.25 -0.2

Or see this region's nucleotide sequence