Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3997 and GFF3998 are separated by 12 nucleotides GFF3998 and GFF3999 are separated by 15 nucleotides
GFF3997 - hypothetical protein, at 370,667 to 371,818
GFF3997
GFF3998 - hypothetical protein, at 371,831 to 372,619
GFF3998
GFF3999 - hypothetical protein, at 372,635 to 373,285
GFF3999
Position (kb) 371
372
373 Strain fitness (log2 ratio) -2
-1
0
1 at 371.084 kb on + strand, within GFF3997 at 371.090 kb on + strand, within GFF3997 at 371.090 kb on + strand, within GFF3997 at 371.090 kb on + strand, within GFF3997 at 371.091 kb on - strand, within GFF3997 at 371.091 kb on - strand, within GFF3997 at 371.208 kb on - strand, within GFF3997 at 371.208 kb on - strand, within GFF3997 at 371.307 kb on - strand, within GFF3997 at 371.433 kb on + strand, within GFF3997 at 371.466 kb on - strand, within GFF3997 at 371.531 kb on + strand, within GFF3997 at 371.531 kb on + strand, within GFF3997 at 371.532 kb on - strand, within GFF3997 at 371.532 kb on - strand, within GFF3997 at 371.532 kb on - strand, within GFF3997 at 371.597 kb on + strand, within GFF3997 at 371.598 kb on - strand, within GFF3997 at 371.598 kb on - strand, within GFF3997 at 371.854 kb on + strand at 371.854 kb on + strand at 371.854 kb on + strand at 371.854 kb on + strand at 371.854 kb on + strand at 371.854 kb on + strand at 371.855 kb on - strand at 371.855 kb on - strand at 371.855 kb on - strand at 371.855 kb on - strand at 371.856 kb on + strand at 371.856 kb on + strand at 371.856 kb on + strand at 371.856 kb on + strand at 371.856 kb on + strand at 371.856 kb on + strand at 371.857 kb on - strand at 371.857 kb on - strand at 372.259 kb on - strand, within GFF3998 at 372.408 kb on + strand, within GFF3998 at 372.408 kb on + strand, within GFF3998 at 372.409 kb on - strand, within GFF3998 at 372.732 kb on + strand, within GFF3999 at 372.732 kb on + strand, within GFF3999 at 372.732 kb on + strand, within GFF3999 at 372.733 kb on - strand, within GFF3999 at 372.765 kb on + strand, within GFF3999 at 372.765 kb on + strand, within GFF3999 at 372.765 kb on + strand, within GFF3999 at 372.766 kb on - strand, within GFF3999 at 372.766 kb on - strand, within GFF3999 at 372.795 kb on + strand, within GFF3999 at 372.795 kb on + strand, within GFF3999 at 372.795 kb on + strand, within GFF3999 at 372.795 kb on + strand, within GFF3999 at 372.795 kb on + strand, within GFF3999 at 372.795 kb on + strand, within GFF3999 at 372.796 kb on - strand, within GFF3999 at 373.203 kb on + strand, within GFF3999 at 373.255 kb on - strand at 373.255 kb on - strand at 373.429 kb on - strand at 373.429 kb on - strand at 373.457 kb on + strand at 373.458 kb on - strand at 373.474 kb on + strand at 373.474 kb on + strand at 373.474 kb on + strand at 373.475 kb on - strand at 373.475 kb on - strand at 373.531 kb on - strand at 373.531 kb on - strand at 373.534 kb on + strand at 373.534 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 371,084 + GFF3997 0.36 +0.7 371,090 + GFF3997 0.37 -0.8 371,090 + GFF3997 0.37 +0.1 371,090 + GFF3997 0.37 +0.9 371,091 - GFF3997 0.37 +1.5 371,091 - GFF3997 0.37 -0.1 371,208 - GFF3997 0.47 +0.4 371,208 - GFF3997 0.47 -0.6 371,307 - GFF3997 0.56 -0.1 371,433 + GFF3997 0.66 -0.0 371,466 - GFF3997 0.69 -0.0 371,531 + GFF3997 0.75 -0.5 371,531 + GFF3997 0.75 +0.4 371,532 - GFF3997 0.75 +0.2 371,532 - GFF3997 0.75 -0.4 371,532 - GFF3997 0.75 -0.9 371,597 + GFF3997 0.81 +1.0 371,598 - GFF3997 0.81 +1.7 371,598 - GFF3997 0.81 -0.1 371,854 + -0.8 371,854 + -2.5 371,854 + +0.1 371,854 + -0.3 371,854 + +0.1 371,854 + +0.9 371,855 - -0.6 371,855 - +0.8 371,855 - +1.0 371,855 - +0.4 371,856 + +0.7 371,856 + +0.8 371,856 + +0.4 371,856 + +1.2 371,856 + +0.9 371,856 + -2.0 371,857 - +0.2 371,857 - -0.0 372,259 - GFF3998 0.54 +0.3 372,408 + GFF3998 0.73 -0.6 372,408 + GFF3998 0.73 +0.4 372,409 - GFF3998 0.73 -0.2 372,732 + GFF3999 0.15 -0.2 372,732 + GFF3999 0.15 +0.3 372,732 + GFF3999 0.15 +1.6 372,733 - GFF3999 0.15 +0.8 372,765 + GFF3999 0.20 -0.7 372,765 + GFF3999 0.20 -0.3 372,765 + GFF3999 0.20 -1.1 372,766 - GFF3999 0.20 +1.0 372,766 - GFF3999 0.20 +0.6 372,795 + GFF3999 0.25 +0.2 372,795 + GFF3999 0.25 -0.4 372,795 + GFF3999 0.25 +0.5 372,795 + GFF3999 0.25 +0.6 372,795 + GFF3999 0.25 +0.7 372,795 + GFF3999 0.25 +0.1 372,796 - GFF3999 0.25 -0.8 373,203 + GFF3999 0.87 +0.1 373,255 - +1.2 373,255 - -0.4 373,429 - +0.5 373,429 - -0.1 373,457 + -0.9 373,458 - +0.5 373,474 + +0.4 373,474 + -0.9 373,474 + -1.0 373,475 - -1.3 373,475 - +0.2 373,531 - +0.9 373,531 - -0.1 373,534 + +0.5 373,534 + +1.2
Or see this region's nucleotide sequence