Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3983 and GFF3984 are separated by 328 nucleotides GFF3984 and GFF3985 are separated by 29 nucleotides GFF3985 and GFF3986 are separated by 330 nucleotides
GFF3983 - Acyl-CoA thioesterase 2, at 352,218 to 353,093
GFF3983
GFF3984 - Nitrogen regulatory protein P-II 2, at 353,422 to 353,760
GFF3984
GFF3985 - Ammonia channel, at 353,790 to 355,286
GFF3985
GFF3986 - Isoleucine--tRNA ligase, at 355,617 to 358,646
GFF3986
Position (kb) 353
354
355
356 Strain fitness (log2 ratio) -2
-1
0
1
2 at 352.825 kb on - strand, within GFF3983 at 353.092 kb on - strand at 353.146 kb on + strand at 353.146 kb on + strand at 353.147 kb on - strand at 353.573 kb on - strand, within GFF3984 at 353.860 kb on + strand at 354.012 kb on + strand, within GFF3985 at 354.102 kb on + strand, within GFF3985 at 354.103 kb on - strand, within GFF3985 at 354.109 kb on - strand, within GFF3985 at 354.234 kb on + strand, within GFF3985 at 354.234 kb on + strand, within GFF3985 at 354.234 kb on + strand, within GFF3985 at 354.234 kb on + strand, within GFF3985 at 354.235 kb on - strand, within GFF3985 at 354.235 kb on - strand, within GFF3985 at 354.235 kb on - strand, within GFF3985 at 354.293 kb on - strand, within GFF3985 at 354.354 kb on + strand, within GFF3985 at 354.354 kb on + strand, within GFF3985 at 354.381 kb on + strand, within GFF3985 at 354.382 kb on - strand, within GFF3985 at 354.498 kb on + strand, within GFF3985 at 354.499 kb on - strand, within GFF3985 at 354.606 kb on + strand, within GFF3985 at 354.806 kb on + strand, within GFF3985 at 354.967 kb on - strand, within GFF3985 at 354.967 kb on - strand, within GFF3985 at 355.071 kb on + strand, within GFF3985 at 355.071 kb on + strand, within GFF3985 at 355.078 kb on - strand, within GFF3985 at 355.101 kb on + strand, within GFF3985 at 355.275 kb on + strand at 355.276 kb on - strand at 355.276 kb on - strand at 355.276 kb on - strand at 355.526 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 352,825 - GFF3983 0.69 +0.8 353,092 - +0.7 353,146 + +1.3 353,146 + +0.5 353,147 - -0.5 353,573 - GFF3984 0.45 -1.3 353,860 + +1.4 354,012 + GFF3985 0.15 +2.1 354,102 + GFF3985 0.21 +0.0 354,103 - GFF3985 0.21 +0.9 354,109 - GFF3985 0.21 +1.7 354,234 + GFF3985 0.30 -0.3 354,234 + GFF3985 0.30 -0.4 354,234 + GFF3985 0.30 +1.4 354,234 + GFF3985 0.30 -0.6 354,235 - GFF3985 0.30 +0.7 354,235 - GFF3985 0.30 -0.7 354,235 - GFF3985 0.30 -0.3 354,293 - GFF3985 0.34 -0.8 354,354 + GFF3985 0.38 +0.7 354,354 + GFF3985 0.38 -0.7 354,381 + GFF3985 0.39 -0.4 354,382 - GFF3985 0.40 +1.6 354,498 + GFF3985 0.47 -0.2 354,499 - GFF3985 0.47 -0.3 354,606 + GFF3985 0.55 -0.7 354,806 + GFF3985 0.68 -1.1 354,967 - GFF3985 0.79 -0.7 354,967 - GFF3985 0.79 -0.5 355,071 + GFF3985 0.86 +0.2 355,071 + GFF3985 0.86 +0.5 355,078 - GFF3985 0.86 -0.1 355,101 + GFF3985 0.88 -1.2 355,275 + +0.3 355,276 - -0.6 355,276 - -1.9 355,276 - -0.8 355,526 + +0.7
Or see this region's nucleotide sequence