Strain Fitness in Xanthobacter sp. DMC5 around GFF3914

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3913 and GFF3914 are separated by 564 nucleotidesGFF3914 and GFF3915 are separated by 469 nucleotides GFF3913 - RNA polymerase-binding transcription factor CarD, at 280,552 to 281,139 GFF3913 GFF3914 - Adenosylhomocysteinase, at 281,704 to 283,101 GFF3914 GFF3915 - Low affinity potassium transport system protein kup, at 283,571 to 285,457 GFF3915 Position (kb) 281 282 283 284Strain fitness (log2 ratio) -1 0 1at 281.436 kb on - strandat 281.436 kb on - strandat 281.519 kb on + strandat 281.590 kb on + strandat 281.592 kb on + strandat 281.593 kb on - strandat 281.612 kb on + strandat 281.637 kb on + strandat 283.220 kb on + strandat 283.674 kb on - strandat 283.674 kb on - strandat 283.787 kb on + strand, within GFF3915at 283.787 kb on + strand, within GFF3915at 283.890 kb on - strand, within GFF3915

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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281,436 - +0.9
281,436 - +1.1
281,519 + -0.9
281,590 + -1.3
281,592 + +1.1
281,593 - +0.1
281,612 + -1.2
281,637 + -1.4
283,220 + -0.1
283,674 - -0.8
283,674 - +1.5
283,787 + GFF3915 0.11 -0.6
283,787 + GFF3915 0.11 +0.1
283,890 - GFF3915 0.17 -0.9

Or see this region's nucleotide sequence