Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3901 and GFF3902 are separated by 139 nucleotides GFF3902 and GFF3903 are separated by 3 nucleotides
GFF3901 - 2-dehydro-3-deoxygluconokinase, at 267,679 to 268,623
GFF3901
GFF3902 - hypothetical protein, at 268,763 to 269,470
GFF3902
GFF3903 - Aspartate/prephenate aminotransferase, at 269,474 to 270,661
GFF3903
Position (kb) 268
269
270 Strain fitness (log2 ratio) -2
-1
0
1
2 at 267.812 kb on + strand, within GFF3901 at 267.953 kb on + strand, within GFF3901 at 267.953 kb on + strand, within GFF3901 at 268.214 kb on + strand, within GFF3901 at 268.214 kb on + strand, within GFF3901 at 268.215 kb on - strand, within GFF3901 at 268.215 kb on - strand, within GFF3901 at 268.239 kb on - strand, within GFF3901 at 268.241 kb on + strand, within GFF3901 at 268.241 kb on + strand, within GFF3901 at 268.242 kb on - strand, within GFF3901 at 268.331 kb on + strand, within GFF3901 at 268.487 kb on + strand, within GFF3901 at 268.487 kb on + strand, within GFF3901 at 268.488 kb on - strand, within GFF3901 at 268.517 kb on + strand, within GFF3901 at 268.666 kb on + strand at 268.666 kb on + strand at 268.666 kb on + strand at 269.151 kb on + strand, within GFF3902 at 269.151 kb on + strand, within GFF3902 at 269.166 kb on + strand, within GFF3902 at 269.167 kb on - strand, within GFF3902 at 269.554 kb on - strand at 269.568 kb on + strand at 269.568 kb on + strand at 269.568 kb on + strand at 269.569 kb on - strand at 269.691 kb on + strand, within GFF3903 at 269.691 kb on + strand, within GFF3903 at 269.691 kb on + strand, within GFF3903 at 269.691 kb on + strand, within GFF3903 at 269.692 kb on - strand, within GFF3903 at 269.692 kb on - strand, within GFF3903 at 269.692 kb on - strand, within GFF3903 at 269.692 kb on - strand, within GFF3903 at 269.692 kb on - strand, within GFF3903 at 269.832 kb on + strand, within GFF3903 at 269.832 kb on + strand, within GFF3903 at 269.833 kb on - strand, within GFF3903 at 269.833 kb on - strand, within GFF3903 at 269.893 kb on - strand, within GFF3903 at 269.943 kb on + strand, within GFF3903 at 269.943 kb on + strand, within GFF3903 at 269.944 kb on - strand, within GFF3903 at 269.944 kb on - strand, within GFF3903 at 270.042 kb on + strand, within GFF3903 at 270.042 kb on + strand, within GFF3903 at 270.043 kb on - strand, within GFF3903 at 270.043 kb on - strand, within GFF3903 at 270.043 kb on - strand, within GFF3903 at 270.043 kb on - strand, within GFF3903 at 270.279 kb on + strand, within GFF3903 at 270.279 kb on + strand, within GFF3903 at 270.280 kb on - strand, within GFF3903 at 270.348 kb on + strand, within GFF3903 at 270.348 kb on + strand, within GFF3903 at 270.348 kb on + strand, within GFF3903 at 270.348 kb on + strand, within GFF3903 at 270.348 kb on + strand, within GFF3903 at 270.349 kb on - strand, within GFF3903 at 270.469 kb on + strand, within GFF3903 at 270.469 kb on + strand, within GFF3903 at 270.469 kb on + strand, within GFF3903 at 270.469 kb on + strand, within GFF3903 at 270.470 kb on - strand, within GFF3903 at 270.470 kb on - strand, within GFF3903
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 267,812 + GFF3901 0.14 +0.1 267,953 + GFF3901 0.29 +0.6 267,953 + GFF3901 0.29 +1.7 268,214 + GFF3901 0.57 -0.1 268,214 + GFF3901 0.57 -1.0 268,215 - GFF3901 0.57 +0.2 268,215 - GFF3901 0.57 +0.2 268,239 - GFF3901 0.59 +0.6 268,241 + GFF3901 0.59 +1.0 268,241 + GFF3901 0.59 -1.1 268,242 - GFF3901 0.60 -0.3 268,331 + GFF3901 0.69 -0.3 268,487 + GFF3901 0.86 +0.1 268,487 + GFF3901 0.86 +0.7 268,488 - GFF3901 0.86 +0.4 268,517 + GFF3901 0.89 +0.0 268,666 + +0.5 268,666 + -0.4 268,666 + -1.0 269,151 + GFF3902 0.55 -1.1 269,151 + GFF3902 0.55 -0.1 269,166 + GFF3902 0.57 +1.3 269,167 - GFF3902 0.57 +1.0 269,554 - +1.2 269,568 + +0.9 269,568 + +0.0 269,568 + +0.2 269,569 - +0.5 269,691 + GFF3903 0.18 +1.3 269,691 + GFF3903 0.18 +1.5 269,691 + GFF3903 0.18 +0.8 269,691 + GFF3903 0.18 +1.2 269,692 - GFF3903 0.18 -0.2 269,692 - GFF3903 0.18 -0.3 269,692 - GFF3903 0.18 +0.9 269,692 - GFF3903 0.18 +1.0 269,692 - GFF3903 0.18 -0.1 269,832 + GFF3903 0.30 +1.1 269,832 + GFF3903 0.30 -0.3 269,833 - GFF3903 0.30 -1.9 269,833 - GFF3903 0.30 -0.3 269,893 - GFF3903 0.35 +0.4 269,943 + GFF3903 0.39 +1.3 269,943 + GFF3903 0.39 +0.9 269,944 - GFF3903 0.40 +1.1 269,944 - GFF3903 0.40 +0.5 270,042 + GFF3903 0.48 +0.6 270,042 + GFF3903 0.48 +0.9 270,043 - GFF3903 0.48 -0.1 270,043 - GFF3903 0.48 +1.1 270,043 - GFF3903 0.48 -0.5 270,043 - GFF3903 0.48 -2.7 270,279 + GFF3903 0.68 -0.2 270,279 + GFF3903 0.68 +2.3 270,280 - GFF3903 0.68 -1.2 270,348 + GFF3903 0.74 +1.0 270,348 + GFF3903 0.74 +1.3 270,348 + GFF3903 0.74 +0.9 270,348 + GFF3903 0.74 +2.0 270,348 + GFF3903 0.74 -0.1 270,349 - GFF3903 0.74 +0.8 270,469 + GFF3903 0.84 -0.0 270,469 + GFF3903 0.84 +1.1 270,469 + GFF3903 0.84 +0.6 270,469 + GFF3903 0.84 +1.1 270,470 - GFF3903 0.84 -0.2 270,470 - GFF3903 0.84 +0.2
Or see this region's nucleotide sequence