Strain Fitness in Xanthobacter sp. DMC5 around GFF3825

Experiment: D,L-Lactate and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3823 and GFF3824 overlap by 4 nucleotidesGFF3824 and GFF3825 are separated by 43 nucleotidesGFF3825 and GFF3826 are separated by 162 nucleotidesGFF3826 and GFF3827 are separated by 184 nucleotides GFF3823 - hypothetical protein, at 178,567 to 181,113 GFF3823 GFF3824 - putative ABC transporter ATP-binding protein, at 181,110 to 181,784 GFF3824 GFF3825 - hypothetical protein, at 181,828 to 182,553 GFF3825 GFF3826 - hypothetical protein, at 182,716 to 183,018 GFF3826 GFF3827 - Cytochrome c6, at 183,203 to 185,203 GFF3827 Position (kb) 181 182 183Strain fitness (log2 ratio) -1 0 1at 181.820 kb on + strandat 181.821 kb on - strandat 181.910 kb on + strand, within GFF3825at 181.918 kb on - strand, within GFF3825at 182.418 kb on + strand, within GFF3825at 182.419 kb on - strand, within GFF3825at 182.419 kb on - strand, within GFF3825at 182.477 kb on + strand, within GFF3825at 182.478 kb on - strand, within GFF3825at 182.667 kb on + strandat 183.427 kb on - strand, within GFF3827

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
remove
181,820 + -0.9
181,821 - +1.1
181,910 + GFF3825 0.11 +1.2
181,918 - GFF3825 0.12 +1.2
182,418 + GFF3825 0.81 -0.1
182,419 - GFF3825 0.81 +1.0
182,419 - GFF3825 0.81 +1.6
182,477 + GFF3825 0.89 +0.3
182,478 - GFF3825 0.90 -1.1
182,667 + -0.4
183,427 - GFF3827 0.11 +1.2

Or see this region's nucleotide sequence