Strain Fitness in Xanthobacter sp. DMC5 around GFF3801

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3800 and GFF3801 are separated by 175 nucleotidesGFF3801 and GFF3802 are separated by 183 nucleotides GFF3800 - hypothetical protein, at 157,292 to 158,572 GFF3800 GFF3801 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 158,748 to 159,584 GFF3801 GFF3802 - Phenylacetate-coenzyme A ligase, at 159,768 to 161,012 GFF3802 Position (kb) 158 159 160Strain fitness (log2 ratio) -2 -1 0 1at 157.850 kb on + strand, within GFF3800at 157.884 kb on - strand, within GFF3800at 157.884 kb on - strand, within GFF3800at 157.946 kb on + strand, within GFF3800at 157.947 kb on - strand, within GFF3800at 157.947 kb on - strand, within GFF3800at 157.947 kb on - strand, within GFF3800at 157.988 kb on + strand, within GFF3800at 157.988 kb on + strand, within GFF3800at 157.989 kb on - strand, within GFF3800at 157.989 kb on - strand, within GFF3800at 157.989 kb on - strand, within GFF3800at 157.994 kb on + strand, within GFF3800at 157.994 kb on + strand, within GFF3800at 157.995 kb on - strand, within GFF3800at 158.198 kb on + strand, within GFF3800at 158.205 kb on - strand, within GFF3800at 158.234 kb on + strand, within GFF3800at 158.249 kb on + strand, within GFF3800at 158.250 kb on - strand, within GFF3800at 158.250 kb on - strand, within GFF3800at 158.250 kb on - strand, within GFF3800at 158.250 kb on - strand, within GFF3800at 158.276 kb on + strand, within GFF3800at 158.277 kb on - strand, within GFF3800at 158.348 kb on + strand, within GFF3800at 158.348 kb on + strand, within GFF3800at 158.348 kb on + strand, within GFF3800at 158.349 kb on - strand, within GFF3800at 158.349 kb on - strand, within GFF3800at 158.349 kb on - strand, within GFF3800at 158.447 kb on + strandat 158.447 kb on + strandat 158.817 kb on - strandat 158.829 kb on + strandat 158.829 kb on + strandat 158.829 kb on + strandat 158.829 kb on + strandat 158.830 kb on - strandat 158.830 kb on - strandat 158.830 kb on - strandat 158.918 kb on + strand, within GFF3801at 159.120 kb on + strand, within GFF3801at 159.120 kb on + strand, within GFF3801at 159.120 kb on + strand, within GFF3801at 159.120 kb on + strand, within GFF3801at 159.120 kb on + strand, within GFF3801at 159.120 kb on + strand, within GFF3801at 159.121 kb on - strand, within GFF3801at 159.121 kb on - strand, within GFF3801at 159.122 kb on + strand, within GFF3801at 159.122 kb on + strand, within GFF3801at 159.123 kb on - strand, within GFF3801at 159.165 kb on + strand, within GFF3801at 159.165 kb on + strand, within GFF3801at 159.172 kb on - strand, within GFF3801at 159.211 kb on - strand, within GFF3801at 159.211 kb on - strand, within GFF3801at 159.420 kb on + strand, within GFF3801at 159.420 kb on + strand, within GFF3801at 159.421 kb on - strand, within GFF3801at 159.421 kb on - strand, within GFF3801at 159.421 kb on - strand, within GFF3801at 159.426 kb on + strand, within GFF3801at 159.426 kb on + strand, within GFF3801at 159.426 kb on + strand, within GFF3801at 159.426 kb on + strand, within GFF3801at 159.427 kb on - strand, within GFF3801at 159.504 kb on + strandat 159.616 kb on - strandat 159.673 kb on + strandat 159.673 kb on + strandat 159.674 kb on - strandat 159.674 kb on - strandat 159.674 kb on - strandat 159.674 kb on - strandat 159.999 kb on + strand, within GFF3802at 160.000 kb on - strand, within GFF3802at 160.071 kb on + strand, within GFF3802at 160.071 kb on + strand, within GFF3802at 160.071 kb on + strand, within GFF3802at 160.071 kb on + strand, within GFF3802at 160.071 kb on + strand, within GFF3802at 160.071 kb on + strand, within GFF3802at 160.071 kb on + strand, within GFF3802at 160.072 kb on - strand, within GFF3802at 160.072 kb on - strand, within GFF3802at 160.170 kb on + strand, within GFF3802at 160.171 kb on - strand, within GFF3802at 160.171 kb on - strand, within GFF3802at 160.171 kb on - strand, within GFF3802at 160.274 kb on + strand, within GFF3802at 160.459 kb on - strand, within GFF3802at 160.459 kb on - strand, within GFF3802at 160.488 kb on + strand, within GFF3802

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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157,850 + GFF3800 0.44 +0.6
157,884 - GFF3800 0.46 -0.5
157,884 - GFF3800 0.46 +0.2
157,946 + GFF3800 0.51 -0.3
157,947 - GFF3800 0.51 +0.7
157,947 - GFF3800 0.51 +0.2
157,947 - GFF3800 0.51 -0.8
157,988 + GFF3800 0.54 -0.2
157,988 + GFF3800 0.54 +0.1
157,989 - GFF3800 0.54 +0.3
157,989 - GFF3800 0.54 +0.3
157,989 - GFF3800 0.54 +0.3
157,994 + GFF3800 0.55 +0.1
157,994 + GFF3800 0.55 -0.8
157,995 - GFF3800 0.55 -1.3
158,198 + GFF3800 0.71 -0.9
158,205 - GFF3800 0.71 -0.7
158,234 + GFF3800 0.74 +0.8
158,249 + GFF3800 0.75 +0.2
158,250 - GFF3800 0.75 -0.4
158,250 - GFF3800 0.75 -0.2
158,250 - GFF3800 0.75 +0.1
158,250 - GFF3800 0.75 -0.1
158,276 + GFF3800 0.77 +1.1
158,277 - GFF3800 0.77 +0.5
158,348 + GFF3800 0.82 -0.5
158,348 + GFF3800 0.82 -0.7
158,348 + GFF3800 0.82 -0.3
158,349 - GFF3800 0.83 -0.1
158,349 - GFF3800 0.83 -0.6
158,349 - GFF3800 0.83 -0.1
158,447 + -0.5
158,447 + -0.4
158,817 - +0.1
158,829 + -0.5
158,829 + +0.5
158,829 + +1.1
158,829 + +0.2
158,830 - +0.5
158,830 - -0.5
158,830 - -0.9
158,918 + GFF3801 0.20 +1.1
159,120 + GFF3801 0.44 +1.2
159,120 + GFF3801 0.44 -0.3
159,120 + GFF3801 0.44 -0.3
159,120 + GFF3801 0.44 +1.4
159,120 + GFF3801 0.44 +0.7
159,120 + GFF3801 0.44 +0.1
159,121 - GFF3801 0.45 -0.2
159,121 - GFF3801 0.45 -1.2
159,122 + GFF3801 0.45 +0.1
159,122 + GFF3801 0.45 +1.1
159,123 - GFF3801 0.45 +0.1
159,165 + GFF3801 0.50 +0.3
159,165 + GFF3801 0.50 +0.8
159,172 - GFF3801 0.51 -0.0
159,211 - GFF3801 0.55 -0.7
159,211 - GFF3801 0.55 -0.8
159,420 + GFF3801 0.80 -0.6
159,420 + GFF3801 0.80 +0.8
159,421 - GFF3801 0.80 -0.4
159,421 - GFF3801 0.80 -2.5
159,421 - GFF3801 0.80 +0.3
159,426 + GFF3801 0.81 -0.7
159,426 + GFF3801 0.81 +0.3
159,426 + GFF3801 0.81 +0.4
159,426 + GFF3801 0.81 +0.4
159,427 - GFF3801 0.81 +0.5
159,504 + -1.0
159,616 - -0.9
159,673 + +0.4
159,673 + +0.1
159,674 - +0.2
159,674 - +0.2
159,674 - -0.2
159,674 - +1.4
159,999 + GFF3802 0.19 +0.3
160,000 - GFF3802 0.19 -0.4
160,071 + GFF3802 0.24 -0.1
160,071 + GFF3802 0.24 -1.2
160,071 + GFF3802 0.24 -0.2
160,071 + GFF3802 0.24 -1.4
160,071 + GFF3802 0.24 -0.9
160,071 + GFF3802 0.24 -0.4
160,071 + GFF3802 0.24 +1.0
160,072 - GFF3802 0.24 -0.7
160,072 - GFF3802 0.24 -0.1
160,170 + GFF3802 0.32 -0.0
160,171 - GFF3802 0.32 +0.6
160,171 - GFF3802 0.32 +1.0
160,171 - GFF3802 0.32 -0.5
160,274 + GFF3802 0.41 -0.6
160,459 - GFF3802 0.56 -0.9
160,459 - GFF3802 0.56 -0.4
160,488 + GFF3802 0.58 +1.4

Or see this region's nucleotide sequence