Strain Fitness in Xanthobacter sp. DMC5 around GFF3750

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3749 and GFF3750 are separated by 14 nucleotidesGFF3750 and GFF3751 are separated by 56 nucleotides GFF3749 - hypothetical protein, at 91,813 to 94,296 GFF3749 GFF3750 - LL-diaminopimelate aminotransferase, at 94,311 to 95,561 GFF3750 GFF3751 - Bifunctional riboflavin kinase/FMN adenylyltransferase, at 95,618 to 96,571 GFF3751 Position (kb) 94 95 96Strain fitness (log2 ratio) -1 0 1at 94.430 kb on - strandat 94.562 kb on - strand, within GFF3750at 94.946 kb on - strand, within GFF3750at 94.994 kb on - strand, within GFF3750at 95.029 kb on - strand, within GFF3750at 95.117 kb on - strand, within GFF3750at 95.126 kb on - strand, within GFF3750at 95.126 kb on - strand, within GFF3750at 95.126 kb on - strand, within GFF3750at 95.126 kb on - strand, within GFF3750at 95.282 kb on - strand, within GFF3750at 95.282 kb on - strand, within GFF3750at 95.483 kb on - strandat 95.588 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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94,430 - +0.7
94,562 - GFF3750 0.20 -1.4
94,946 - GFF3750 0.51 -1.3
94,994 - GFF3750 0.55 -1.1
95,029 - GFF3750 0.57 +0.3
95,117 - GFF3750 0.64 -0.3
95,126 - GFF3750 0.65 -1.3
95,126 - GFF3750 0.65 +1.4
95,126 - GFF3750 0.65 -0.9
95,126 - GFF3750 0.65 -0.6
95,282 - GFF3750 0.78 -0.8
95,282 - GFF3750 0.78 +0.2
95,483 - +1.2
95,588 - +0.3

Or see this region's nucleotide sequence