Strain Fitness in Xanthobacter sp. DMC5 around GFF3742

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3741 and GFF3742 are separated by 102 nucleotidesGFF3742 and GFF3743 are separated by 43 nucleotidesGFF3743 and GFF3744 are separated by 105 nucleotides GFF3741 - tRNA modification GTPase MnmE, at 83,034 to 84,344 GFF3741 GFF3742 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG, at 84,447 to 86,324 GFF3742 GFF3743 - Ribosomal RNA small subunit methyltransferase G, at 86,368 to 87,024 GFF3743 GFF3744 - Chromosome partitioning protein ParA, at 87,130 to 87,984 GFF3744 Position (kb) 84 85 86 87Strain fitness (log2 ratio) -1 0 1at 84.426 kb on - strandat 84.765 kb on + strand, within GFF3742at 84.765 kb on + strand, within GFF3742at 85.245 kb on + strand, within GFF3742at 85.245 kb on + strand, within GFF3742at 85.677 kb on + strand, within GFF3742at 85.907 kb on + strand, within GFF3742at 86.166 kb on + strandat 86.166 kb on + strandat 86.563 kb on - strand, within GFF3743at 87.022 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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84,426 - +0.3
84,765 + GFF3742 0.17 -0.1
84,765 + GFF3742 0.17 -1.1
85,245 + GFF3742 0.42 -0.8
85,245 + GFF3742 0.42 +0.4
85,677 + GFF3742 0.65 +0.0
85,907 + GFF3742 0.78 -0.4
86,166 + -1.2
86,166 + -0.3
86,563 - GFF3743 0.30 -0.2
87,022 + -1.1

Or see this region's nucleotide sequence