Strain Fitness in Xanthobacter sp. DMC5 around GFF3730

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3728 and GFF3729 are separated by 80 nucleotidesGFF3729 and GFF3730 are separated by 92 nucleotidesGFF3730 and GFF3731 are separated by 808 nucleotides GFF3728 - hypothetical protein, at 69,974 to 70,828 GFF3728 GFF3729 - Ferric uptake regulation protein, at 70,909 to 71,340 GFF3729 GFF3730 - [Ribosomal protein S18]-alanine N-acetyltransferase, at 71,433 to 71,909 GFF3730 GFF3731 - Fe/S biogenesis protein NfuA, at 72,718 to 73,278 GFF3731 Position (kb) 71 72Strain fitness (log2 ratio) -1 0 1 2at 70.556 kb on + strand, within GFF3728at 70.692 kb on + strand, within GFF3728at 70.943 kb on + strandat 70.943 kb on + strandat 70.944 kb on - strandat 71.026 kb on + strand, within GFF3729at 71.476 kb on + strandat 71.476 kb on + strandat 71.507 kb on - strand, within GFF3730at 71.512 kb on - strand, within GFF3730at 71.522 kb on - strand, within GFF3730at 72.586 kb on - strandat 72.586 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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70,556 + GFF3728 0.68 +0.2
70,692 + GFF3728 0.84 +0.6
70,943 + +0.7
70,943 + +0.7
70,944 - +0.7
71,026 + GFF3729 0.27 -0.5
71,476 + -1.2
71,476 + +0.4
71,507 - GFF3730 0.16 -1.1
71,512 - GFF3730 0.17 -0.9
71,522 - GFF3730 0.19 +1.1
72,586 - +2.0
72,586 - -1.2

Or see this region's nucleotide sequence